William F. Flynn
William F. Flynn
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Cross-species single-cell analysis of pancreatic ductal adenocarcinoma reveals antigen-presenting cancer-associated fibroblasts
E Elyada, M Bolisetty, P Laise, WF Flynn, ET Courtois, RA Burkhart, ...
Cancer discovery 9 (8), 1102-1123, 2019
Identification of a T follicular helper cell subset that drives anaphylactic IgE
U Gowthaman, JS Chen, B Zhang, WF Flynn, Y Lu, W Song, J Joseph, ...
Science 365 (6456), eaaw6433, 2019
Mapping systemic lupus erythematosus heterogeneity at the single-cell level
D Nehar-Belaid, S Hong, R Marches, G Chen, M Bolisetty, J Baisch, ...
Nature immunology 21 (9), 1094-1106, 2020
Single-cell analysis of human glioma and immune cells identifies S100A4 as an immunotherapy target
N Abdelfattah, P Kumar, C Wang, JS Leu, WF Flynn, R Gao, DS Baskin, ...
Nature communications 13 (1), 767, 2022
Targeting p21Cip1 highly expressing cells in adipose tissue alleviates insulin resistance in obesity
L Wang, B Wang, NS Gasek, Y Zhou, RL Cohn, DE Martin, W Zuo, ...
Cell metabolism 34 (1), 75-89. e8, 2022
Potts Hamiltonian models of protein co-variation, free energy landscapes, and evolutionary fitness
RM Levy, A Haldane, WF Flynn
Current opinion in structural biology 43, 55-62, 2017
CUP-AI-Dx: A tool for inferring cancer tissue of origin and molecular subtype using RNA gene-expression data and artificial intelligence
Y Zhao, Z Pan, S Namburi, A Pattison, A Posner, S Balachander, ...
EBioMedicine 61, 2020
Single-cell analysis of endometriosis reveals a coordinated transcriptional programme driving immunotolerance and angiogenesis across eutopic and ectopic tissues
Y Tan, WF Flynn, S Sivajothi, D Luo, SB Bozal, M Davé, AA Luciano, ...
Nature Cell Biology 24 (8), 1306-1318, 2022
Structural propensities of kinase family proteins from a Potts model of residue co‐variation
A Haldane, WF Flynn, P He, RSK Vijayan, RM Levy
Protein Science 25 (8), 1378-1384, 2016
Inference of epistatic effects leading to entrenchment and drug resistance in HIV-1 protease
WF Flynn, A Haldane, BE Torbett, RM Levy
Molecular Biology and Evolution, 10.1093/molbev/msx095, 2017
Identification of EOMES-expressing spermatogonial stem cells and their regulation by PLZF
M Sharma, A Srivastava, HE Fairfield, D Bergstrom, WF Flynn, RE Braun
Elife 8, e43352, 2019
Deep sequencing of protease inhibitor resistant HIV patient isolates reveals patterns of correlated mutations in Gag and protease
WF Flynn, MW Chang, Z Tan, G Oliveira, J Yuan, JF Okulicz, BE Torbett, ...
PLoS computational biology 11 (4), e1004249, 2015
Cellular taxonomy and spatial organization of the murine ventral posterior hypothalamus
LE Mickelsen, WF Flynn, K Springer, L Wilson, EJ Beltrami, M Bolisetty, ...
Elife 9, e58901, 2020
Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)
S Jain, L Pei, JM Spraggins, M Angelo, JP Carson, N Gehlenborg, F Ginty, ...
Nature cell biology 25 (8), 1089-1100, 2023
Asynchronous replica exchange software for grid and heterogeneous computing
E Gallicchio, J Xia, WF Flynn, B Zhang, S Samlalsingh, A Mentes, ...
Computer physics communications 196, 236-246, 2015
Effective renormalized multi-body interactions of harmonically confined ultracold neutral bosons
PR Johnson, D Blume, XY Yin, WF Flynn, E Tiesinga
New Journal of Physics 14 (5), 053037, 2012
Hoohm/CITE-seq-Count: 1.4.2
P Roelli, bbimber, B Flynn, santiagorevale, G Gui, 2019
Large‐scale asynchronous and distributed multidimensional replica exchange molecular simulations and efficiency analysis
J Xia, WF Flynn, E Gallicchio, BW Zhang, P He, Z Tan, RM Levy
Journal of computational chemistry 36 (23), 1772-1785, 2015
A combined treatment of hydration and dynamical effects for the modeling of host–guest binding thermodynamics: the SAMPL5 blinded challenge
RK Pal, K Haider, D Kaur, W Flynn, J Xia, RM Levy, T Taran, L Wickstrom, ...
Journal of computer-aided molecular design 31, 29-44, 2017
Coevolutionary landscape of kinase family proteins: sequence probabilities and functional motifs
A Haldane, WF Flynn, P He, RM Levy
Biophysical journal 114 (1), 21-31, 2018
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