| Embracing the enemy: the diversification of microbial gene repertoires by phage-mediated horizontal gene transfer M Touchon, JAM de Sousa, EPC Rocha Current Opinion in Microbiology 38, 66-73, 2017 | 122 | 2017 |
| The Genetic Basis of Escherichia coli Pathoadaptation to Macrophages M Miskinyte, A Sousa, RS Ramiro, JAM de Sousa, J Kotlinowski, ... PLOS Pathogens 9 (12), e1003802, 2013 | 60 | 2013 |
| Multidrug-resistant bacteria compensate for the epistasis between resistances J Moura de Sousa, R Balbontín, P Durão, I Gordo PLoS biology 15 (4), e2001741, 2017 | 44 | 2017 |
| Phylogenetic background and habitat drive the genetic diversification of Escherichia coli M Touchon, A Perrin, JAM de Sousa, B Vangchhia, S Burn, CL O’Brien, ... Plos Genetics 16 (6), e1008866, 2020 | 19 | 2020 |
| Genetic exchanges are more frequent in bacteria encoding capsules O Rendueles, JAM de Sousa, A Bernheim, M Touchon, EPC Rocha PLOS Genetics 14 (12), e1007862, 2018 | 19 | 2018 |
| Potential for adaptation overrides cost of resistance J Moura de Sousa, A Sousa, C Bourgard, I Gordo Future microbiology 10 (9), 1415-1431, 2015 | 17 | 2015 |
| Bacteriophages benefit from generalized transduction A Fillol-Salom, A Alsaadi, JAM de Sousa, L Zhong, KR Foster, EPC Rocha, ... PLoS pathogens 15 (7), e1007888, 2019 | 16 | 2019 |
| Environmental structure drives resistance to phages and antibiotics during phage therapy and to invading lysogens during colonisation JAM de Sousa, EPC Rocha Scientific reports 9 (1), 1-13, 2019 | 15 | 2019 |
| An ABC method for estimating the rate and distribution of effects of beneficial mutations JA Moura de Sousa, PRA Campos, I Gordo Genome biology and evolution 5 (5), 794-806, 2013 | 13 | 2013 |
| Designing an Epigenetic Approach in Artificial Life: The EpiAL Model JAB Sousa, E Costa Agents and Artificial Intelligence, 78-90, 2010 | 11 | 2010 |
| Trade-Offs of Escherichia coli Adaptation to an Intracellular Lifestyle in Macrophages M Azevedo, A Sousa, J Moura de Sousa, JA Thompson, JT Proença, ... PloS one 11 (1), e0146123, 2016 | 7 | 2016 |
| Competition and fixation of cohorts of adaptive mutations under Fisher geometrical model JAM de Sousa, J Alpedrinha, PRA Campos, I Gordo PeerJ 4, e2256, 2016 | 5 | 2016 |
| Modular prophage interactions driven by capsule serotype select for capsule loss under phage predation JAM de Sousa, A Buffet, M Haudiquet, EPC Rocha, O Rendueles The ISME Journal, 1-17, 2020 | 4 | 2020 |
| Epial-an epigenetic approach for an artificial life model J Sousa, E Costa International Conference on Agents and Artificial Intelligence 2, 90-97, 2010 | 4 | 2010 |
| A stem-cell ageing hypothesis on the origin of Parkinson's disease A Valente, J Sousa, T Outeiro, L Ferreira Nature Precedings, 1-1, 2010 | 2 | 2010 |
| People as Ants: A Multi Pheromone Ubiquitous Approach for Intelligent Transport Systems J Sousa, C Bento 3rd Symposium of Ubiquitous Computing and Ambient Intelligence 2008, 321-325, 2009 | 2 | 2009 |
| Flickring our world: An approach for a graph based exploration of the Flickr community J Tojo, J Sousa, P Gomes 1st International Workshop on Collective Semantics: Collective Intelligence …, 2008 | 2 | 2008 |
| Bacteria have numerous distinctive groups of phage–plasmids with conserved phage and variable plasmid gene repertoires E Pfeifer, JA Moura de Sousa, M Touchon, EPC Rocha Nucleic Acids Research, 2021 | | 2021 |
| An Epigenetic Approach for an Artificial Life Model J Sousa, E Costa | | |
Eduardo RochaCNRS, Institut PasteurVerified email at pasteur.fr
