Jorge Moura de Sousa
Jorge Moura de Sousa
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Embracing the enemy: the diversification of microbial gene repertoires by phage-mediated horizontal gene transfer
M Touchon, JAM de Sousa, EPC Rocha
Current Opinion in Microbiology 38, 66-73, 2017
The Genetic Basis of Escherichia coli Pathoadaptation to Macrophages
M Miskinyte, A Sousa, RS Ramiro, JAM de Sousa, J Kotlinowski, ...
PLOS Pathogens 9 (12), e1003802, 2013
Multidrug-resistant bacteria compensate for the epistasis between resistances
J Moura de Sousa, R Balbontín, P Durão, I Gordo
PLoS biology 15 (4), e2001741, 2017
Phylogenetic background and habitat drive the genetic diversification of Escherichia coli
M Touchon, A Perrin, JAM de Sousa, B Vangchhia, S Burn, CL O’Brien, ...
Plos Genetics 16 (6), e1008866, 2020
Genetic exchanges are more frequent in bacteria encoding capsules
O Rendueles, JAM de Sousa, A Bernheim, M Touchon, EPC Rocha
PLOS Genetics 14 (12), e1007862, 2018
Potential for adaptation overrides cost of resistance
J Moura de Sousa, A Sousa, C Bourgard, I Gordo
Future microbiology 10 (9), 1415-1431, 2015
Bacteriophages benefit from generalized transduction
A Fillol-Salom, A Alsaadi, JAM de Sousa, L Zhong, KR Foster, EPC Rocha, ...
PLoS pathogens 15 (7), e1007888, 2019
Environmental structure drives resistance to phages and antibiotics during phage therapy and to invading lysogens during colonisation
JAM de Sousa, EPC Rocha
Scientific reports 9 (1), 1-13, 2019
An ABC method for estimating the rate and distribution of effects of beneficial mutations
JA Moura de Sousa, PRA Campos, I Gordo
Genome biology and evolution 5 (5), 794-806, 2013
Designing an Epigenetic Approach in Artificial Life: The EpiAL Model
JAB Sousa, E Costa
Agents and Artificial Intelligence, 78-90, 2010
Trade-Offs of Escherichia coli Adaptation to an Intracellular Lifestyle in Macrophages
M Azevedo, A Sousa, J Moura de Sousa, JA Thompson, JT Proença, ...
PloS one 11 (1), e0146123, 2016
Competition and fixation of cohorts of adaptive mutations under Fisher geometrical model
JAM de Sousa, J Alpedrinha, PRA Campos, I Gordo
PeerJ 4, e2256, 2016
Modular prophage interactions driven by capsule serotype select for capsule loss under phage predation
JAM de Sousa, A Buffet, M Haudiquet, EPC Rocha, O Rendueles
The ISME Journal, 1-17, 2020
Epial-an epigenetic approach for an artificial life model
J Sousa, E Costa
International Conference on Agents and Artificial Intelligence 2, 90-97, 2010
A stem-cell ageing hypothesis on the origin of Parkinson's disease
A Valente, J Sousa, T Outeiro, L Ferreira
Nature Precedings, 1-1, 2010
People as Ants: A Multi Pheromone Ubiquitous Approach for Intelligent Transport Systems
J Sousa, C Bento
3rd Symposium of Ubiquitous Computing and Ambient Intelligence 2008, 321-325, 2009
Flickring our world: An approach for a graph based exploration of the Flickr community
J Tojo, J Sousa, P Gomes
1st International Workshop on Collective Semantics: Collective Intelligence …, 2008
Bacteria have numerous distinctive groups of phage–plasmids with conserved phage and variable plasmid gene repertoires
E Pfeifer, JA Moura de Sousa, M Touchon, EPC Rocha
Nucleic Acids Research, 2021
An Epigenetic Approach for an Artificial Life Model
J Sousa, E Costa
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