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Delphine Ropers
Delphine Ropers
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Year
Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli
G Batt, D Ropers, H De Jong, J Geiselmann, R Mateescu, M Page, ...
Bioinformatics 21 (suppl_1), i19-i28, 2005
2452005
Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli
G Batt, D Ropers, H De Jong, J Geiselmann, R Mateescu, M Page, ...
Bioinformatics 21 (suppl_1), i19-i28, 2005
2452005
Acetate metabolism and the inhibition of bacterial growth by acetate
S Pinhal, D Ropers, J Geiselmann, H De Jong
Journal of bacteriology 201 (13), 10.1128/jb. 00147-19, 2019
1912019
Qualitative simulation of the carbon starvation response in Escherichia coli
D Ropers, H De Jong, M Page, D Schneider, J Geiselmann
Biosystems 84 (2), 124-152, 2006
1812006
Shared control of gene expression in bacteria by transcription factors and global physiology of the cell
S Berthoumieux, H De Jong, G Baptist, C Pinel, C Ranquet, D Ropers, ...
Molecular systems biology 9 (1), 634, 2013
1802013
Understanding carbon catabolite repression in Escherichia coli using quantitative models
A Kremling, J Geiselmann, D Ropers, H de Jong
Trends in microbiology 23 (2), 99-109, 2015
1212015
Temporal logic patterns for querying dynamic models of cellular interaction networks
PT Monteiro, D Ropers, R Mateescu, AT Freitas, H De Jong
Bioinformatics 24 (16), i227-i233, 2008
1152008
Conserved stem–loop structures in the HIV-1 RNA region containing the A3 3′ splice site and its cis-regulatory element: possible involvement in RNA splicing
S Jacquenet, D Ropers, PS Bilodeau, L Damier, A Mougin, CM Stoltzfus, ...
Nucleic acids research 29 (2), 464-478, 2001
1042001
A synthetic growth switch based on controlled expression of RNA polymerase
J Izard, CDC Gomez Balderas, D Ropers, S Lacour, X Song, Y Yang, ...
Molecular systems biology 11 (11), 840, 2015
1012015
Differential effects of the SR proteins 9G8, SC35, ASF/SF2, and SRp40 on the utilization of the A1 to A5 splicing sites of HIV-1 RNA
D Ropers, L Ayadi, R Gattoni, S Jacquenet, L Damier, C Branlant, ...
Journal of Biological Chemistry 279 (29), 29963-29973, 2004
992004
Experimental and computational validation of models of fluorescent and luminescent reporter genes in bacteria
H De Jong, C Ranquet, D Ropers, C Pinel, J Geiselmann
BMC systems biology 4, 1-17, 2010
952010
A declarative constraint-based method for analyzing discrete genetic regulatory networks
F Corblin, S Tripodi, E Fanchon, D Ropers, L Trilling
Biosystems 98 (2), 91-104, 2009
692009
Biochemical and NMR study on the competition between proteins SC35, SRp40, and heterogeneous nuclear ribonucleoprotein A1 at the HIV-1 Tat exon 2 splicing site
H Hallay, N Locker, L Ayadi, D Ropers, E Guittet, C Branlant
Journal of biological chemistry 281 (48), 37159-37174, 2006
662006
Qualitative Analysis and Verification of Hybrid Models of Genetic Regulatory Networks: Nutritional Stress Response in Escherichia coli
G Batt, D Ropers, H De Jong, J Geiselmann, M Page, D Schneider
International Workshop on Hybrid Systems: Computation and Control, 134-150, 2005
642005
The Carbon Assimilation Network in Escherichia coli Is Densely Connected and Largely Sign-Determined by Directions of Metabolic Fluxes
V Baldazzi, D Ropers, Y Markowicz, D Kahn, J Geiselmann, H De Jong
PLoS computational biology 6 (6), e1000812, 2010
632010
Mathematical modelling of microbes: metabolism, gene expression and growth
H De Jong, S Casagranda, N Giordano, E Cinquemani, D Ropers, ...
Journal of The Royal Society Interface 14 (136), 20170502, 2017
582017
Mathematical modelling of microbes: metabolism, gene expression and growth
H De Jong, S Casagranda, N Giordano, E Cinquemani, D Ropers, ...
Journal of The Royal Society Interface 14 (136), 20170502, 2017
582017
The post‐transcriptional regulatory system CSR controls the balance of metabolic pools in upper glycolysis of Escherichia coli
M Morin, D Ropers, F Letisse, S Laguerre, JC Portais, ...
Molecular Microbiology 100 (4), 686-700, 2016
472016
Genetic network analyzer: a tool for the qualitative modeling and simulation of bacterial regulatory networks
G Batt, B Besson, PE Ciron, H de Jong, E Dumas, J Geiselmann, R Monte, ...
Bacterial Molecular Networks: Methods and Protocols, 439-462, 2012
432012
Role of RNA structure and protein factors in the control of HIV-1 splicing
JM Saliou, CF Bourgeois, L Ayadi-Ben Mena, D Ropers, S Jacquenet, ...
Front Biosci (Landmark Ed) 14, 2714-2729, 2009
412009
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