| Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data V Boeva, T Popova, K Bleakley, P Chiche, J Cappo, G Schleiermacher, ... Bioinformatics 28 (3), 423-425, 2012 | 916 | 2012 |
| Ploidy and large-scale genomic instability consistently identify basal-like breast carcinomas with BRCA1/2 inactivation T Popova, E Manié, G Rieunier, V Caux-Moncoutier, C Tirapo, T Dubois, ... Cancer research 72 (21), 5454-5462, 2012 | 633 | 2012 |
| Cancer-associated SF3B1 mutations affect alternative splicing by promoting alternative branchpoint usage S Alsafadi, A Houy, A Battistella, T Popova, M Wassef, E Henry, F Tirode, ... Nature communications 7 (1), 10615, 2016 | 389 | 2016 |
| Germline BAP1 mutations predispose to renal cell carcinomas T Popova, L Hebert, V Jacquemin, S Gad, V Caux-Moncoutier, ... The American journal of human genetics 92 (6), 974-980, 2013 | 312 | 2013 |
| Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays T Popova, E Manié, D Stoppa-Lyonnet, G Rigaill, E Barillot, MH Stern Genome biology 10, 1-14, 2009 | 302 | 2009 |
| PML-regulated mitochondrial metabolism enhances chemosensitivity in human ovarian cancers G Gentric, Y Kieffer, V Mieulet, O Goundiam, C Bonneau, F Nemati, ... Cell metabolism 29 (1), 156-173. e10, 2019 | 208 | 2019 |
| The inactive X chromosome is epigenetically unstable and transcriptionally labile in breast cancer R Chaligné, T Popova, MA Mendoza-Parra, MAM Saleem, D Gentien, ... Genome research 25 (4), 488-503, 2015 | 147 | 2015 |
| Outlier response to anti-PD1 in uveal melanoma reveals germline MBD4 mutations in hypermutated tumors M Rodrigues, L Mobuchon, A Houy, A Fiévet, S Gardrat, RL Barnhill, ... Nature communications 9 (1), 1866, 2018 | 129 | 2018 |
| Multi-factor data normalization enables the detection of copy number aberrations in amplicon sequencing data V Boeva, T Popova, M Lienard, S Toffoli, M Kamal, C Le Tourneau, ... Bioinformatics 30 (24), 3443-3450, 2014 | 123 | 2014 |
| Ovarian cancers harboring inactivating mutations in CDK12 display a distinct genomic instability pattern characterized by large tandem duplications T Popova, E Manié, V Boeva, A Battistella, O Goundiam, NK Smith, ... Cancer research 76 (7), 1882-1891, 2016 | 115 | 2016 |
| BRCAness, SLFN11, and RB1 loss predict response to topoisomerase I inhibitors in triple-negative breast cancers F Coussy, R El-Botty, S Château-Joubert, A Dahmani, E Montaudon, ... Science Translational Medicine 12 (531), eaax2625, 2020 | 100 | 2020 |
| Metastatic breast carcinomas display genomic and transcriptomic heterogeneity B Weigelt, CKY Ng, R Shen, T Popova, M Schizas, R Natrajan, O Mariani, ... Modern pathology 28 (3), 340-351, 2015 | 98 | 2015 |
| Polarity gene alterations in pure invasive micropapillary carcinomas of the breast N Gruel, V Benhamo, J Bhalshankar, T Popova, P Fréneaux, L Arnould, ... Breast Cancer Research 16, 1-15, 2014 | 94 | 2014 |
| Bioinformatics for precision medicine in oncology: principles and application to the SHIVA clinical trial N Servant, J Roméjon, P Gestraud, P La Rosa, G Lucotte, S Lair, ... Frontiers in genetics 5, 152, 2014 | 93 | 2014 |
| Effect of RNA quality on transcript intensity levels in microarray analysis of human post-mortem brain tissues T Popova, D Mennerich, A Weith, K Quast BMC genomics 9, 1-14, 2008 | 92 | 2008 |
| A whole‐genome massively parallel sequencing analysis of BRCA1 mutant oestrogen receptor‐negative and ‐positive breast cancers R Natrajan, A Mackay, MB Lambros, B Weigelt, PM Wilkerson, E Manie, ... The Journal of pathology 227 (1), 29-41, 2012 | 73 | 2012 |
| Genomic and transcriptomic heterogeneity in metaplastic carcinomas of the breast S Piscuoglio, CKY Ng, FC Geyer, KA Burke, CF Cowell, LG Martelotto, ... NPJ breast cancer 3 (1), 48, 2017 | 71 | 2017 |
| Genomic hallmarks of homologous recombination deficiency in invasive breast carcinomas E Manié, T Popova, A Battistella, J Tarabeux, V Caux‐Moncoutier, ... International journal of cancer 138 (4), 891-900, 2016 | 70 | 2016 |
| A high-risk retinoblastoma subtype with stemness features, dedifferentiated cone states and neuronal/ganglion cell gene expression J Liu, D Ottaviani, M Sefta, C Desbrousses, E Chapeaublanc, R Aschero, ... Nature communications 12 (1), 5578, 2021 | 61 | 2021 |
| Histo‐genomic stratification reveals the frequent amplification/overexpression of CCNE1 and BRD4 genes in non‐BRCAness high grade ovarian carcinoma O Goundiam, P Gestraud, T Popova, T De la Motte Rouge, V Fourchotte, ... International journal of cancer 137 (8), 1890-1900, 2015 | 52 | 2015 |
