Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations ML Bendall, SLR Stevens, LK Chan, S Malfatti, P Schwientek, J Tremblay, ... The ISME journal 10 (7), 1589-1601, 2016 | 144 | 2016 |
Composition, taxonomy and functional diversity of the oropharynx microbiome in individuals with schizophrenia and controls E Castro-Nallar, ML Bendall, M Pérez-Losada, S Sabuncyan, ... PeerJ 3, e1140, 2015 | 136 | 2015 |
Pathoscope: species identification and strain attribution with unassembled sequencing data OE Francis, M Bendall, S Manimaran, C Hong, NL Clement, ... Genome research 23 (10), 1721-1729, 2013 | 121 | 2013 |
The emergence of lobsters: phylogenetic relationships, morphological evolution and divergence time comparisons of an ancient group (Decapoda: Achelata, Astacidea, Glypheidea … HD Bracken-Grissom, ST Ahyong, RD Wilkinson, RM Feldmann, ... Systematic Biology 63 (4), 457-479, 2014 | 112 | 2014 |
Dual transcriptomic profiling of host and microbiota during health and disease in pediatric asthma M Pérez-Losada, E Castro-Nallar, ML Bendall, RJ Freishtat, KA Crandall PloS one 10 (6), e0131819, 2015 | 72 | 2015 |
Phylogenomically guided identification of industrially relevant GH1 β-glucosidases through DNA synthesis and nanostructure-initiator mass spectrometry RA Heins, X Cheng, S Nath, K Deng, BP Bowen, DC Chivian, S Datta, ... ACS chemical biology 9 (9), 2082-2091, 2014 | 47 | 2014 |
Exploring the roles of DNA methylation in the metal-reducing bacterium Shewanella oneidensis MR-1 ML Bendall, K Luong, KM Wetmore, M Blow, J Korlach, A Deutschbauer, ... Journal of bacteriology 195 (21), 4966-4974, 2013 | 36 | 2013 |
Phylogenetic relationships and molecular adaptation dynamics of human rhinoviruses N Lewis-Rogers, ML Bendall, KA Crandall Molecular biology and evolution 26 (5), 969-981, 2009 | 36 | 2009 |
Fatal hepatic necrosis associated with trazodone and neuroleptic drugs. M Hull, R Jones, M Bendall BMJ: British Medical Journal 309 (6951), 378, 1994 | 33 | 1994 |
Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression ML Bendall, M De Mulder, LP Iñiguez, A Lecanda-Sánchez, ... PLoS computational biology 15 (9), e1006453, 2019 | 18 | 2019 |
Transcriptome patterns in hidradenitis suppurativa: support for the role of antimicrobial peptides and interferon pathways in disease pathogenesis VK Shanmugam, D Jones, S McNish, ML Bendall, KA Crandall Clinical and experimental dermatology 44 (8), 882-892, 2019 | 13 | 2019 |
Long-read, whole-genome shotgun sequence data for five model organisms. Sci. Data 1: 140045 KE Kim, P Peluso, P Babayan, PJ Yeadon, C Yu, WW Fisher, CS Chin, ... | 8 | 2014 |
Evaluation of haplotype callers for next-generation sequencing of viruses A Eliseev, KM Gibson, P Avdeyev, D Novik, ML Bendall, M Pérez-Losada, ... Infection, Genetics and Evolution 82, 104277, 2020 | 7 | 2020 |
A cross-sectional study to characterize local HIV-1 dynamics in Washington, DC using next-generation sequencing KM Gibson, K Jair, AD Castel, ML Bendall, B Wilbourn, JA Jordan, ... Scientific reports 10 (1), 1-18, 2020 | 6 | 2020 |
Phylogenetics applied to genotype/phenotype association and selection analyses with sequence data from angptl4 in humans TJ Maxwell, ML Bendall, J Staples, T Jarvis, KA Crandall International journal of molecular sciences 11 (1), 370-385, 2010 | 4 | 2010 |
Transcriptomic analysis of human endogenous retroviruses in systemic lupus erythematosus LP Iñiguez, M de Mulder Rougvie, N Stearrett, RB Jones, CE Ormsby, ... Proceedings of the National Academy of Sciences 116 (43), 21350-21351, 2019 | 3 | 2019 |
Benchmark evaluation of true single molecular sequencing to determine cystic fibrosis airway microbiome diversity A Hahn, ML Bendall, KM Gibson, H Chaney, I Sami, GF Perez, ... Frontiers in microbiology 9, 1069, 2018 | 3 | 2018 |
HAPHPIPE: Haplotype Reconstruction and Phylodynamics for Deep Sequencing of Intra-Host Viral Populations ML Bendall, KM Gibson, MC Steiner, U Rentia, M Pérez-Losada, ... Molecular Biology and Evolution, 2020 | 1 | 2020 |
Human Endogenous Retrovirus Expression Is Associated with Head and Neck Cancer and Differential Survival AR Kolbe, ML Bendall, AT Pearson, D Paul, DF Nixon, M Pérez-Losada, ... Viruses 12 (9), 956, 2020 | 1 | 2020 |
Validation of Variant Assembly Using HAPHPIPE with Next-Generation Sequence Data from Viruses KM Gibson, MC Steiner, U Rentia, ML Bendall, M Pérez-Losada, ... Viruses 12 (7), 758, 2020 | 1 | 2020 |