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Adam Mark
Adam Mark
Senior Bioinformatics Scientist
Verified email at ucsd.edu
Title
Cited by
Cited by
Year
Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission
S Karthikeyan, JI Levy, P De Hoff, G Humphrey, A Birmingham, K Jepsen, ...
Nature 609 (7925), 101-108, 2022
2352022
High-performance web services for querying gene and variant annotation
J Xin, A Mark, C Afrasiabi, G Tsueng, M Juchler, N Gopal, GS Stupp, ...
Genome biology 17, 1-7, 2016
1812016
A structurally distinct human mycoplasma protein that generically blocks antigen-antibody union
RK Grover, X Zhu, T Nieusma, T Jones, I Boero, AS MacLeod, A Mark, ...
Science 343 (6171), 656-661, 2014
982014
FAK activity sustains intrinsic and acquired ovarian cancer resistance to platinum chemotherapy
CJ Diaz Osterman, D Ozmadenci, EG Kleinschmidt, KN Taylor, AM Barrie, ...
Elife 8, e47327, 2019
922019
Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers.
CJA Ando M, Saito Y, Xu G, Bui NQ, Medetgul-Ernar K, Pu M, Fisch K, Ren S ...
Nature Communications, 2019
802019
Transient genomic instability drives tumorigenesis through accelerated clonal evolution
O Shoshani, B Bakker, L De Haan, AE Tijhuis, Y Wang, DH Kim, ...
Genes & development 35 (15-16), 1093-1108, 2021
522021
H3K27 methylation dynamics during CD4 T cell activation: regulation of JAK/STAT and IL12RB2 expression by JMJD3
SA LaMere, RC Thompson, X Meng, HK Komori, A Mark, DR Salomon
The Journal of Immunology 199 (9), 3158-3175, 2017
352017
Inflammation-driven deaminase deregulation fuels human pre-leukemia stem cell evolution
Q Jiang, J Isquith, L Ladel, A Mark, F Holm, C Mason, Y He, P Mondala, ...
Cell reports 34 (4), 2021
282021
Promoter H3K4 methylation dynamically reinforces activation-induced pathways in human CD4 T cells
SA LaMere, RC Thompson, HK Komori, A Mark, DR Salomon
Genes & Immunity 17 (5), 283-297, 2016
282016
Mutation of chromatin regulators and focal hotspot alterations characterize human papillomavirus–positive oropharyngeal squamous cell carcinoma
S Haft, S Ren, G Xu, A Mark, K Fisch, TW Guo, Z Khan, J Pang, M Ando, ...
Cancer 125 (14), 2423-2434, 2019
272019
Wu, C. mygene: Access MyGene
A Mark, R Thompson, C Afrasiabi
Info_ services. R package version 1 (0), 2019
192019
Variant STAT4 and Response to Ruxolitinib in an Autoinflammatory Syndrome
H Baghdassarian, SA Blackstone, OS Clay, R Philips, B Matthiasardottir, ...
New England Journal of Medicine 388 (24), 2241-2252, 2023
182023
Metastatic triple-negative breast cancer patient with TP53 tumor mutation experienced 11 months progression-free survival on bortezomib monotherapy without adverse events after …
T Meißner, A Mark, C Williams, WE Berdel, S Wiebe, A Kerkhoff, ...
Molecular Case Studies 3 (4), a001677, 2017
172017
Nuclear Parkin activates the ERRα transcriptional program and drives widespread changes in gene expression following hypoxia
SE Shires, JM Quiles, RH Najor, LJ Leon, MQ Cortez, MA Lampert, ...
Scientific Reports 10 (1), 8499, 2020
152020
Wastewater and surface monitoring to detect COVID-19 in elementary school settings: The Safer at School Early Alert project
R Fielding-Miller, S Karthikeyan, T Gaines, RS Garfein, RA Salido, ...
medRxiv, 2021
142021
mygene: Access MyGene. Info_services
A Mark, R Thompson, C Afrasiabi, C Wu
R package version 1 (0), 2019
112019
Detection and targeting of splicing deregulation in pediatric acute myeloid leukemia stem cells
I van Der Werf, PK Mondala, SK Steel, L Balaian, L Ladel, CN Mason, ...
Cell Reports Medicine 4 (3), 2023
92023
MyGene. info: gene annotation query as a service
C Wu, A Mark, AI Su
bioRxiv, 009332, 2014
82014
Safer at school early alert: an observational study of wastewater and surface monitoring to detect COVID-19 in elementary schools
R Fielding-Miller, S Karthikeyan, T Gaines, RS Garfein, RA Salido, ...
The Lancet Regional Health–Americas 19, 2023
72023
Wastewater and surface monitoring to detect COVID-19 in elementary school settings: The Safer at School Early Alert project (preprint)
RK Fielding-Miller, S Karthikeyan, T Gaines, RS Garfein, RA Salido, ...
42021
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