Ionas Erb
Title
Cited by
Cited by
Year
SwissRegulon: a database of genome-wide annotations of regulatory sites
M Pachkov, I Erb, N Molina, E Van Nimwegen
Nucleic acids research 35 (suppl_1), D127-D131, 2007
1322007
The functional importance of telomere clustering: global changes in gene expression result from SIR factor dispersion
A Taddei, G Van Houwe, S Nagai, I Erb, E van Nimwegen, SM Gasser
Genome research 19 (4), 611-625, 2009
1232009
Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes
A Vlasova, S Capella-Gutiérrez, M Rendón-Anaya, M Hernández-Oñate, ...
Genome biology 17 (1), 1-18, 2016
1142016
Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures
JF Taly, C Magis, G Bussotti, JM Chang, P Di Tommaso, I Erb, ...
Nature Protocols 6 (11), 1669-1682, 2011
992011
Multiple sequence alignment modeling: methods and applications
M Chatzou, C Magis, JM Chang, C Kemena, G Bussotti, I Erb, ...
Briefings in bioinformatics 17 (6), 1009-1023, 2016
912016
Alignathon: a competitive assessment of whole-genome alignment methods
D Earl, N Nguyen, G Hickey, RS Harris, S Fitzgerald, K Beal, I Seledtsov, ...
Genome research 24 (12), 2077-2089, 2014
822014
MotEvo: integrated Bayesian probabilistic methods for inferring regulatory sites and motifs on multiple alignments of DNA sequences
P Arnold, I Erb, M Pachkov, N Molina, E van Nimwegen
Bioinformatics 28 (4), 487-494, 2012
772012
Understanding sequencing data as compositions: an outlook and review
TP Quinn, I Erb, MF Richardson, TM Crowley
Bioinformatics 34 (16), 2870-2878, 2018
752018
Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx
F Abascal, A Corvelo, F Cruz, JL Villanueva-Cañas, A Vlasova, ...
Genome biology 17 (1), 1-19, 2016
712016
Third report on chicken genes and chromosomes 2015
M Schmid, J Smith, DW Burt, BL Aken, PB Antin, AL Archibald, C Ashwell, ...
Cytogenetic and genome research 145 (2), 78-179, 2015
592015
How should we measure proportionality on relative gene expression data?
I Erb, C Notredame
Theory in Biosciences 135 (1-2), 21-36, 2016
522016
T-Coffee: tree-based consistency objective function for alignment evaluation
C Magis, JF Taly, G Bussotti, JM Chang, P Di Tommaso, I Erb, ...
Multiple Sequence Alignment Methods, 117-129, 2014
512014
Genome-wide expression profiling, in vivo DNA binding analysis, and probabilistic motif prediction reveal novel Abf1 target genes during fermentation, respiration, and …
U Schlecht, I Erb, P Demougin, N Robine, V Borde, E Nimwegen, ...
Molecular biology of the cell 19 (5), 2193-2207, 2008
372008
Transcription factor binding site positioning in yeast: proximal promoter motifs characterize TATA-less promoters
I Erb, E Van Nimwegen
PLoS One 6 (9), e24279, 2011
362011
BlastR—fast and accurate database searches for non-coding RNAs
G Bussotti, E Raineri, I Erb, M Zytnicki, A Wilm, E Beaudoing, P Bucher, ...
Nucleic acids research 39 (16), 6886-6895, 2011
332011
A field guide for the compositional analysis of any-omics data
TP Quinn, I Erb, G Gloor, C Notredame, MF Richardson, TM Crowley
GigaScience 8 (9), giz107, 2019
302019
Multi-information in the thermodynamic limit
I Erb, N Ay
Journal of Statistical Physics 115 (3-4), 949-976, 2004
302004
Principal component analysis of the effects of environmental enrichment and (-)-epigallocatechin-3-gallate on age-associated learning deficits in a mouse model of Down syndrome
S Catuara-Solarz, J Espinosa-Carrasco, I Erb, K Langohr, C Notredame, ...
Frontiers in behavioral neuroscience 9, 330, 2015
292015
Combined treatment With environmental enrichment And (-)-epigallocatechin-3-gallate ameliorates learning deficits And hippocampal alterations In A mouse model Of Down syndrome
S Catuara-Solarz, J Espinosa-Carrasco, I Erb, K Langohr, JR Gonzalez, ...
eneuro 3 (5), 2016
222016
Use of ChIP-Seq data for the design of a multiple promoter-alignment method
I Erb, JR Gonzalez-Vallinas, G Bussotti, E Blanco, E Eyras, C Notredame
Nucleic acids research 40 (7), e52-e52, 2012
222012
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