Jean-François Taly
Jean-François Taly
CRG - Centre for Genomic regulation - Barcelona
Verified email at crg.es
Title
Cited by
Cited by
Year
T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension
P Di Tommaso, S Moretti, I Xenarios, M Orobitg, A Montanyola, JM Chang, ...
Nucleic acids research 39 (suppl_2), W13-W17, 2011
7892011
ABC likelihood-free methods for model choice in Gibbs random fields
A Grelaud, CP Robert, JM Marin, F Rodolphe, JF Taly
Bayesian Analysis 4 (2), 317-335, 2009
190*2009
Protein secondary structure assignment revisited: a detailed analysis of different assignment methods
J Martin, G Letellier, A Marin, JF Taly, AG de Brevern, JF Gibrat
BMC structural biology 5 (1), 1-17, 2005
1542005
Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee
JM Chang, P Di Tommaso, JF Taly, C Notredame
BMC bioinformatics 13 (S4), S1, 2012
1042012
Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures
JF Taly, C Magis, G Bussotti, JM Chang, P Di Tommaso, I Erb, ...
Nature protocols 6 (11), 1669-1682, 2011
992011
Large-scale screening of a targeted Enterococcus faecalis mutant library identifies envelope fitness factors
L Rigottier-Gois, A Alberti, A Houel, JF Taly, P Palcy, J Manson, D Pinto, ...
PloS one 6 (12), e29023, 2011
572011
T-Coffee: tree-based consistency objective function for alignment evaluation
C Magis, JF Taly, G Bussotti, JM Chang, P Di Tommaso, I Erb, ...
Multiple Sequence Alignment Methods, 117-129, 2014
512014
Pharmacological assessment defines Leishmania donovani casein kinase 1 as a drug target and reveals important functions in parasite viability and intracellular infection
N Rachidi, JF Taly, E Durieu, O Leclercq, N Aulner, E Prina, P Pescher, ...
Antimicrobial agents and chemotherapy 58 (3), 1501-1515, 2014
352014
Cyclosporin A treatment of Leishmania donovani reveals stage-specific functions of cyclophilins in parasite proliferation and viability
WL Yau, T Blisnick, JF Taly, M Helmer-Citterich, C Schiene-Fischer, ...
PLoS Negl Trop Dis 4 (6), e729, 2010
342010
STRIKE: evaluation of protein MSAs using a single 3D structure
C Kemena, JF Taly, J Kleinjung, C Notredame
Bioinformatics 27 (24), 3385-3391, 2011
332011
Can molecular dynamics simulations help in discriminating correct from erroneous protein 3D models?
JF Taly, A Marin, JF Gibrat
BMC bioinformatics 9 (1), 6, 2008
182008
SuperFly: a comparative database for quantified spatio-temporal gene expression patterns in early dipteran embryos
D Cicin-Sain, AH Pulido, A Crombach, KR Wotton, E Jiménez-Guri, ...
Nucleic Acids Research 43 (D1), D751-D755, 2015
162015
Efficient and interpretable prediction of protein functional classes by Correspondence Analysis and Compact Set Relations
JM Chang, JF Taly, I Erb, TY Sung, WL Hsu, CY Tang, C Notredame, ...
PloS one 8 (10), e75542, 2013
82013
STRIKE: Evaluation of Protein Multiple Sequence Alignments us-ing a Single Three Dimensional Structure
C Kemena, JF Taly, J Kleinjung, C Notredame
Bioinformatics, 2011
12011
Efficient and Interpretable Prediction of Protein Functional Classes by Correspondence
JM Chang, JF Taly, I Erb, TY Sung, WL Hsu
2013
Large-Scale Screening of Enterococcus faecalis Mutant Library Identifies Envelope Fitness Factors
L Rigottier-Gois, A Alberti, A Houel, JF Taly, P Palcy, J Manson, D Pinto, ...
2011
Large-Scale Screening of a Targeted Enterococcus faecalis Mutant Library Identifies
L Rigottier-Gois, A Alberti, A Houel, JF Taly, P Palcy
2011
Cyclosporin A Treatment of Leishmania donovani Reveals Stage-Specific
WL Yau, T Blisnick, JF Taly, M Helmer-Citterich, C Schiene-Fischer
2010
Choix de modèle pour les champs de Gibbs par un algorithme ABC.
A Grelaud, C Robert, JM Marin, F Rodolphe, JF Taly
2009
ABC methods for model choice in Gibbs random fields Application to protein 3D structure prediction
A Grelaud, CP Robert, JM Marin, F Rodolphe, JF Taly
2008
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Articles 1–20