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Nicola De Maio
Nicola De Maio
Scientist in Molecular Evolution, European Bioinformatic Institute (EMBL-EBI), Cambridge
Verified email at ebi.ac.uk - Homepage
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Year
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchęne, M Fourment, ...
PLoS computational biology 15 (4), e1006650, 2019
15862019
PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals
R Kofler, P Orozco-terWengel, N De Maio, RV Pandey, V Nolte, A Futschik, ...
PloS one 6 (1), e15925, 2011
5162011
Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131
N Stoesser, AE Sheppard, L Pankhurst, N De Maio, CE Moore, R Sebra, ...
MBio 7 (2), e02162-15, 2016
2382016
New routes to phylogeography: a Bayesian structured coalescent approximation
N De Maio, CH Wu, KM O’Reilly, D Wilson
PLoS genetics 11 (8), e1005421, 2015
1912015
Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes
N De Maio, LP Shaw, A Hubbard, S George, ND Sanderson, J Swann, ...
Microbial genomics 5 (9), 2019
1462019
Ultrafast Sample placement on Existing tRees (UShER) enables real-time phylogenetics for the SARS-CoV-2 pandemic
Y Turakhia, B Thornlow, AS Hinrichs, N De Maio, L Gozashti, R Lanfear, ...
Nature Genetics 53 (6), 809-816, 2021
98*2021
SCOTTI: efficient reconstruction of transmission within outbreaks with the structured coalescent
N De Maio, CH Wu, DJ Wilson
PLoS computational biology 12 (9), e1005130, 2016
982016
VARIATION IN THERMAL PERFORMANCE AND REACTION NORMS AMONG POPULATIONS OF DROSOPHILA MELANOGASTER
P Klepsatel, M Gáliková, N De Maio, CD Huber, C Schlötterer, T Flatt
Evolution 67 (12), 3573-3587, 2013
912013
Issues with SARS-CoV-2 sequencing data
N De Maio, C Walker, R Borges, L Weilguny, G Slodkowicz, N Goldman
892020
Covert dissemination of carbapenemase-producing Klebsiella pneumoniae (KPC) in a successfully controlled outbreak: long-and short-read whole-genome sequencing demonstrate …
J Martin, HTT Phan, J Findlay, N Stoesser, L Pankhurst, I Navickaite, ...
Journal of Antimicrobial Chemotherapy 72 (11), 3025-3034, 2017
712017
Stability of SARS-CoV-2 phylogenies
Y Turakhia, N De Maio, B Thornlow, L Gozashti, R Lanfear, CR Walker, ...
PLoS genetics 16 (11), e1009175, 2020
692020
Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines
SJ Bush, D Foster, DW Eyre, EL Clark, N De Maio, LP Shaw, N Stoesser, ...
GigaScience 9 (2), giaa007, 2020
672020
Linking great apes genome evolution across time scales using polymorphism-aware phylogenetic models
N De Maio, C Schlötterer, C Kosiol
Molecular biology and evolution 30 (10), 2249-2262, 2013
672013
PoMo: an allele frequency-based approach for species tree estimation
N De Maio, D Schrempf, C Kosiol
Systematic biology 64 (6), 1018-1031, 2015
652015
A phylodynamic workflow to rapidly gain insights into the dispersal history and dynamics of SARS-CoV-2 lineages
S Dellicour, K Durkin, SL Hong, B Vanmechelen, J Martí-Carreras, MS Gill, ...
Molecular biology and evolution 38 (4), 1608-1613, 2021
612021
Want to track pandemic variants faster? Fix the bioinformatics bottleneck
EB Hodcroft, N De Maio, R Lanfear, DR MacCannell, BQ Minh, ...
Nature 591 (7848), 30-33, 2021
612021
Bayesian reconstruction of transmission within outbreaks using genomic variants
N De Maio, CJ Worby, DJ Wilson, N Stoesser
PLoS computational biology 14 (4), e1006117, 2018
602018
Pneumococcal Capsule Synthesis Locus cps as Evolutionary Hotspot with Potential to Generate Novel Serotypes by Recombination
RJ Mostowy, NJ Croucher, N De Maio, C Chewapreecha, SJ Salter, ...
Molecular biology and evolution 34 (10), 2537-2554, 2017
602017
Reversible polymorphism-aware phylogenetic models and their application to tree inference
D Schrempf, BQ Minh, N De Maio, A von Haeseler, C Kosiol
Journal of theoretical biology 407, 362-370, 2016
582016
Reproductive and post‐reproductive life history of wild‐caught Drosophila melanogaster under laboratory conditions
P Klepsatel, M Gáliková, N De Maio, S Ricci, C Schlötterer, T Flatt
Journal of Evolutionary Biology 26 (7), 1508-1520, 2013
582013
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