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Oliver Ratmann
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Genomics and epidemiology of the P. 1 SARS-CoV-2 lineage in Manaus, Brazil
NR Faria, TA Mellan, C Whittaker, IM Claro, DS Candido, S Mishra, ...
Science 372 (6544), 815-821, 2021
11022021
Assessing transmissibility of SARS-CoV-2 lineage B. 1.1. 7 in England
E Volz, S Mishra, M Chand, JC Barrett, R Johnson, L Geidelberg, ...
Nature 593 (7858), 266-269, 2021
7792021
Transmission of SARS-CoV-2 Lineage B. 1.1. 7 in England: Insights from linking epidemiological and genetic data
E Volz, S Mishra, M Chand, JC Barrett, R Johnson, L Geidelberg, ...
MedRxiv, 2020.12. 30.20249034, 2021
5762021
Age groups that sustain resurging COVID-19 epidemics in the United States
M Monod, A Blenkinsop, X Xi, D Hebert, S Bershan, S Tietze, M Baguelin, ...
Science 371 (6536), eabe8372, 2021
2152021
Model criticism based on likelihood-free inference, with an application to protein network evolution
O Ratmann, C Andrieu, C Wiuf, S Richardson
Proceedings of the National Academy of Sciences 106 (26), 10576-10581, 2009
1842009
Inference for nonlinear epidemiological models using genealogies and time series
DA Rasmussen, O Ratmann, K Koelle
PLoS computational biology 7 (8), e1002136, 2011
1772011
Global minimum estimates of children affected by COVID-19-associated orphanhood and deaths of caregivers: a modelling study
SD Hillis, HJT Unwin, Y Chen, L Cluver, L Sherr, PS Goldman, ...
The Lancet 398 (10298), 391-402, 2021
1622021
State-level tracking of COVID-19 in the United States
HJT Unwin, S Mishra, VC Bradley, A Gandy, TA Mellan, H Coupland, ...
Nature communications 11 (1), 1-9, 2020
1452020
Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum
O Ratmann, O Jørgensen, T Hinkley, M Stumpf, S Richardson, C Wiuf
PLoS Computational Biology 3 (11), e230, 2007
1432007
Report 21: Estimating COVID-19 cases and reproduction number in Brazil
TA Mellan, HH Hoeltgebaum, S Mishra, C Whittaker, RP Schnekenberg, ...
1262020
Sources of HIV infection among men having sex with men and implications for prevention
O Ratmann, A Van Sighem, D Bezemer, A Gavryushkina, S Jurriaans, ...
Science translational medicine 8 (320), 320ra2-320ra2, 2016
1172016
Improved algorithmic complexity for the 3SEQ recombination detection algorithm
HM Lam, O Ratmann, MF Boni
Molecular biology and evolution 35 (1), 247-251, 2018
1152018
PHYLOSCANNER: inferring transmission from within-and between-host pathogen genetic diversity
C Wymant, M Hall, O Ratmann, D Bonsall, T Golubchik, M de Cesare, ...
Molecular biology and evolution 35 (3), 719-733, 2018
1142018
Genomics and epidemiology of a novel SARS-CoV-2 lineage in Manaus
NR Faria, TA Mellan, C Whittaker, IM Claro, DDS Candido, S Mishra, ...
Brazil. medRxiv 2021 (26.21252554), 2021
1062021
COVID-19–associated orphanhood and caregiver death in the United States
SD Hillis, A Blenkinsop, A Villaveces, FB Annor, L Liburd, GM Massetti, ...
Pediatrics 148 (6), 2021
982021
Changing composition of SARS-CoV-2 lineages and rise of Delta variant in England
S Mishra, S Mindermann, M Sharma, C Whittaker, TA Mellan, T Wilton, ...
EClinicalMedicine 39, 101064, 2021
842021
Impact of cross-protective vaccines on epidemiological and evolutionary dynamics of influenza
N Arinaminpathy, O Ratmann, K Koelle, SL Epstein, GE Price, C Viboud, ...
Proceedings of the National Academy of Sciences 109 (8), 3173-3177, 2012
742012
Cultural conformity generates extremely stable traditions in bird song
RF Lachlan, O Ratmann, S Nowicki
Nature communications 9 (1), 1-9, 2018
732018
Dispersion of the HIV-1 epidemic in men who have sex with men in the Netherlands: a combined mathematical model and phylogenetic analysis
D Bezemer, A Cori, O Ratmann, A van Sighem, HS Hermanides, ...
PLoS medicine 12 (11), e1001898, 2015
682015
Explaining rapid reinfections in multiple-wave influenza outbreaks: Tristan da Cunha 1971 epidemic as a case study
A Camacho, S Ballesteros, AL Graham, F Carrat, O Ratmann, B Cazelles
Proceedings of the Royal Society B: Biological Sciences 278 (1725), 3635-3643, 2011
662011
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Articles 1–20