Niall Haslam

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Denis ShieldsProfessor of Clinical Bioinformatics, University College DublinVerified email at ucd.ie
Norman E. DaveyInstitute Of Cancer Research, LondonVerified email at icr.ac.uk
Toby GibsonEMBLVerified email at embl.de
Gerald WeberLecturer, Federal University of Minas Gerais, BrazilVerified email at ufmg.br
Cameron NeylonCentre for Culture and Technology, Curtin UniversityVerified email at cameronneylon.net
Jonathan EssexVerified email at soton.ac.uk
Adam Prugel-BennettUniversity of SouthamptonVerified email at ecs.soton.ac.uk
Gianluca PollastriAssociate Professor, University College DublinVerified email at ucd.ie
Catherine MooneyAssistant Professor, School of Computer Science, University College DublinVerified email at ucd.ie
Richard J EdwardsSchool of Biotechnology and Biomolecular Science, University of New South Wales, Sydney, AustraliaVerified email at unsw.edu.au
Aidan BuddTrainer, EMBO Solutions GmbHVerified email at earlham.ac.uk
Nigel BrownCEITEC, Masaryk University, Brno, Czech RepublicVerified email at ceitec.muni.cz
Leszek RychlewskiBioInfoBank InstituteVerified email at bioinfo.pl
Kate GouldGarvan Institute of Medical ResearchVerified email at garvan.org.au
ahmed sayadiBioinformatics Research, Uppsala universityVerified email at ebc.uu.se
Robert J. WeatherittEMBL Australia and Garvan Institute of Medical ResearchVerified email at emblaustralia.org
mark bradleyVerified email at ed.ac.uk
KEVIN O'BRIENUniversity College DublinVerified email at ucd.ie
Lars Juhl JensenUniversity of CopenhagenVerified email at cpr.ku.dk
Heiko HornComputational BiologistVerified email at broadinstitute.org

Niall Haslam

axial3d

Verified email at axial3d.com - Homepage

Computational Biology bioinformatics machine learning networks image analysis


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ELM—the database of eukaryotic linear motifs H Dinkel, S Michael, RJ Weatheritt, NE Davey, K Van Roey, B Altenberg, ... Nucleic acids research 40 (D1), D242-D251, 2012	324	2012
Understanding eukaryotic linear motifs and their role in cell signaling and regulation F Diella, N Haslam, C Chica, A Budd, S Michael, NP Brown, G Travé, ... Front Biosci 13 (6580), 603, 2008	302	2008
ELM: the status of the 2010 eukaryotic linear motif resource CM Gould, F Diella, A Via, P Puntervoll, C Gemünd, ... Nucleic acids research 38 (suppl_1), D167-D180, 2010	279	2010
Towards the improved discovery and design of functional peptides: common features of diverse classes permit generalized prediction of bioactivity C Mooney, NJ Haslam, G Pollastri, DC Shields PloS one 7 (10), e45012, 2012	179	2012
An analysis of the feasibility of short read sequencing N Whiteford, N Haslam, G Weber, A Prügel-Bennett, JW Essex, PL Roach, ... Nucleic acids research 33 (19), e171-e171, 2005	156	2005
SLiMSearch 2.0: biological context for short linear motifs in proteins NE Davey, NJ Haslam, DC Shields, RJ Edwards Nucleic acids research 39 (suppl_2), W56-W60, 2011	76	2011
Prediction of short linear protein binding regions C Mooney, G Pollastri, DC Shields, NJ Haslam Journal of molecular biology 415 (1), 193-204, 2012	72	2012
SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs NE Davey, NJ Haslam, DC Shields, RJ Edwards Nucleic acids research 38 (suppl_2), W534-W539, 2010	64	2010
Thermal equivalence of DNA duplexes without calculation of melting temperature G Weber, N Haslam, N Whiteford, A Prügel-Bennett, JW Essex, C Neylon Nature Physics 2 (1), 55-59, 2006	49	2006
PeptideLocator: prediction of bioactive peptides in protein sequences C Mooney, NJ Haslam, TA Holton, G Pollastri, DC Shields Bioinformatics 29 (9), 1120-1126, 2013	45	2013
Minimum information about a protein affinity reagent (MIAPAR) J Bourbeillon, S Orchard, I Benhar, C Borrebaeck, A de Daruvar, S Dübel, ... Nature biotechnology 28 (7), 650-653, 2010	42	2010
Thermal equivalence of DNA duplexes for probe design G Weber, N Haslam, JW Essex, C Neylon Journal of Physics: Condensed Matter 21 (3), 034106, 2008	40	2008
A community standard format for the representation of protein affinity reagents DE Gloriam, S Orchard, D Bertinetti, E Björling, E Bongcam-Rudloff, ... Molecular & Cellular Proteomics 9 (1), 1-10, 2010	37	2010
Profile-based short linear protein motif discovery NJ Haslam, DC Shields Bmc Bioinformatics 13 (1), 1-9, 2012	22	2012
Peptide-binding domains: are limp handshakes safest? NJ Haslam, DC Shields Science signaling 5 (243), pe40-pe40, 2012	12	2012
Visualising the repeat structure of genomic sequences N Whiteford, N Haslam, G Weber, A Prugel-Bennett, J Essex, C Neylon Complex Systems 17 (4), 381-398, 2008	11	2008
EpiC: an open resource for exploring epitopes to aid antibody-based experiments NJ Haslam, TJ Gibson Journal of proteome research 9 (7), 3759-3763, 2010	9	2010
SLiMScape: a protein short linear motif analysis plugin for Cytoscape K T O’Brien, NJ Haslam, DC Shields BMC bioinformatics 14 (1), 1-3, 2013	7	2013
SLiMSearch: a webserver for finding novel occurrences of short linear motifs in proteins, incorporating sequence context NE Davey, NJ Haslam, DC Shields, RJ Edwards IAPR International Conference on Pattern Recognition in Bioinformatics, 50-61, 2010	7	2010
DoReMi: context-based prioritization of linear motif matches H Horn, N Haslam, LJ Jensen PeerJ 2, e315, 2014	6	2014

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