| ELM—the database of eukaryotic linear motifs H Dinkel, S Michael, RJ Weatheritt, NE Davey, K Van Roey, B Altenberg, ... Nucleic acids research 40 (D1), D242-D251, 2012 | 319 | 2012 |
| Understanding eukaryotic linear motifs and their role in cell signaling and regulation F Diella, N Haslam, C Chica, A Budd, S Michael, NP Brown, G Travé, ... Front Biosci 13 (6580), 603, 2008 | 298 | 2008 |
| ELM: the status of the 2010 eukaryotic linear motif resource CM Gould, F Diella, A Via, P Puntervoll, C Gemünd, ... Nucleic acids research 38 (suppl_1), D167-D180, 2010 | 278 | 2010 |
| Towards the improved discovery and design of functional peptides: common features of diverse classes permit generalized prediction of bioactivity C Mooney, NJ Haslam, G Pollastri, DC Shields PloS one 7 (10), e45012, 2012 | 165 | 2012 |
| An analysis of the feasibility of short read sequencing N Whiteford, N Haslam, G Weber, A Prügel-Bennett, JW Essex, PL Roach, ... Nucleic acids research 33 (19), e171-e171, 2005 | 156 | 2005 |
| SLiMSearch 2.0: biological context for short linear motifs in proteins NE Davey, NJ Haslam, DC Shields, RJ Edwards Nucleic acids research 39 (suppl_2), W56-W60, 2011 | 76 | 2011 |
| Prediction of short linear protein binding regions C Mooney, G Pollastri, DC Shields, NJ Haslam Journal of molecular biology 415 (1), 193-204, 2012 | 72 | 2012 |
| SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs NE Davey, NJ Haslam, DC Shields, RJ Edwards Nucleic acids research 38 (suppl_2), W534-W539, 2010 | 64 | 2010 |
| Thermal equivalence of DNA duplexes without calculation of melting temperature G Weber, N Haslam, N Whiteford, A Prügel-Bennett, JW Essex, C Neylon Nature Physics 2 (1), 55-59, 2006 | 49 | 2006 |
| PeptideLocator: prediction of bioactive peptides in protein sequences C Mooney, NJ Haslam, TA Holton, G Pollastri, DC Shields Bioinformatics 29 (9), 1120-1126, 2013 | 44 | 2013 |
| Minimum information about a protein affinity reagent (MIAPAR) J Bourbeillon, S Orchard, I Benhar, C Borrebaeck, A de Daruvar, S Dübel, ... Nature biotechnology 28 (7), 650-653, 2010 | 41 | 2010 |
| Thermal equivalence of DNA duplexes for probe design G Weber, N Haslam, JW Essex, C Neylon Journal of Physics: Condensed Matter 21 (3), 034106, 2008 | 40 | 2008 |
| A community standard format for the representation of protein affinity reagents DE Gloriam, S Orchard, D Bertinetti, E Björling, E Bongcam-Rudloff, ... Molecular & Cellular Proteomics 9 (1), 1-10, 2010 | 37 | 2010 |
| Profile-based short linear protein motif discovery NJ Haslam, DC Shields Bmc Bioinformatics 13 (1), 1-9, 2012 | 21 | 2012 |
| Peptide-binding domains: are limp handshakes safest? NJ Haslam, DC Shields Science signaling 5 (243), pe40-pe40, 2012 | 12 | 2012 |
| Visualising the repeat structure of genomic sequences N Whiteford, N Haslam, G Weber, A Prugel-Bennett, J Essex, C Neylon Complex Systems 17 (4), 381-398, 2008 | 11 | 2008 |
| EpiC: an open resource for exploring epitopes to aid antibody-based experiments NJ Haslam, TJ Gibson Journal of proteome research 9 (7), 3759-3763, 2010 | 9 | 2010 |
| SLiMScape: a protein short linear motif analysis plugin for Cytoscape K T O’Brien, NJ Haslam, DC Shields BMC bioinformatics 14 (1), 1-3, 2013 | 7 | 2013 |
| SLiMSearch: a webserver for finding novel occurrences of short linear motifs in proteins, incorporating sequence context NE Davey, NJ Haslam, DC Shields, RJ Edwards IAPR International Conference on Pattern Recognition in Bioinformatics, 50-61, 2010 | 7 | 2010 |
| DoReMi: context-based prioritization of linear motif matches H Horn, N Haslam, LJ Jensen PeerJ 2, e315, 2014 | 6 | 2014 |
Denis ShieldsProfessor of Clinical Bioinformatics, University College DublinVerified email at ucd.ie
