Tiago Paixao
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When three is not a crowd: a Crossregulation Model of the dynamics and repertoire selection of regulatory CD4+ T cells
J Carneiro, K Leon, Í Caramalho, C Van Den Dool, R Gardner, V Oliveira, ...
Immunological reviews 216 (1), 48-68, 2007
Dynamics of transcription factor binding site evolution
M Tuğrul, T Paixao, NH Barton, G Tkačik
PLoS genetics 11 (11), e1005639, 2015
Immunological self-tolerance: Lessons from mathematical modeling
J Carneiro, T Paixão, D Milutinovic, J Sousa, K Leon, R Gardner, J Faro
Journal of Computational and Applied Mathematics 184 (1), 77-100, 2005
Stochastic monoallelic expression of IL-10 in T cells
DP Calado, T Paixao, D Holmberg, M Haury
The Journal of Immunology 177 (8), 5358-5364, 2006
The effect of gene interactions on the long-term response to selection
T Paixão, NH Barton
Proceedings of the National Academy of Sciences 113 (16), 4422-4427, 2016
Towards a runtime comparison of natural and artificial evolution
T Paixão, J Pérez Heredia, D Sudholt, B Trubenová
Algorithmica 78, 681-713, 2017
Within-host competition selects for plasmid-encoded toxin–antitoxin systems
TF Cooper, T Paixão, JA Heinemann
Proceedings of the Royal Society B: Biological Sciences 277 (1697), 3149-3155, 2010
How to escape local optima in black box optimisation: when non-elitism outperforms elitism
PS Oliveto, T Paixão, J Pérez Heredia, D Sudholt, B Trubenová
Algorithmica 80, 1604-1633, 2018
Automated knee osteoarthritis assessment increases physicians’ agreement rate and accuracy: data from the osteoarthritis initiative
S Nehrer, R Ljuhar, P Steindl, R Simon, D Maurer, D Ljuhar, Z Bertalan, ...
Cartilage 13 (1_suppl), 957S-965S, 2021
On the mechanistic nature of epistasis in a canonical cis-regulatory element
M Lagator, T Paixao, NH Barton, JP Bollback, CC Guet
Elife 6, e25192, 2017
Toward a unifying framework for evolutionary processes
T Paixão, G Badkobeh, N Barton, D Çörüş, DC Dang, T Friedrich, ...
Journal of Theoretical Biology 383, 28-43, 2015
Redundancy and the Evolution of Cis-Regulatory Element Multiplicity
T Paixão, RBR Azevedo
PLoS computational biology 6 (7), e1000848, 2010
Stress-induced mutagenesis: Stress diversity facilitates the persistence of mutator genes
M Lukačišinová, S Novak, T Paixão
PLoS computational biology 13 (7), e1005609, 2017
Quantitative insights into stochastic monoallelic expression of cytokine genes
T Paixao, TP Carvalho, DP Calado, J Carneiro
Immunology and cell biology 85 (4), 315-322, 2007
Accumulation of Spontaneous Mutations in the Ciliate Tetrahymena thermophila
HA Long, T Paixão, RBR Azevedo, RA Zufall
Genetics 195 (2), 527-540, 2013
A novel quantitative metric for joint space width: data from the Osteoarthritis Initiative (OAI)
T Paixao, MD DiFranco, R Ljuhar, D Ljuhar, C Goetz, Z Bertalan, ...
Osteoarthritis and Cartilage 28 (8), 1055-1061, 2020
Local genetic context shapes the function of a gene regulatory network
A Nagy-Staron, K Tomasek, C Caruso Carter, E Sonnleitner, B Kavčič, ...
Elife 10, e65993, 2021
First steps towards a runtime comparison of natural and artificial evolution
T Paixao, J Pérez Heredia, D Sudholt, B Trubenova
Proceedings of the 2015 Annual Conference on Genetic and Evolutionary …, 2015
Selection limits to adaptive walks on correlated landscapes
JP Heredia, B Trubenová, D Sudholt, T Paixão
Genetics 205 (2), 803-825, 2017
Model checking gene regulatory networks
M Giacobbe, CC Guet, A Gupta, TA Henzinger, T Paixão, T Petrov
International Conference on Tools and Algorithms for the Construction and …, 2015
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