| Mapping interactions of microbial metabolites with human G-protein-coupled receptors DA Colosimo, JA Kohn, PM Luo, FJ Piscotta, SM Han, AJ Pickard, A Rao, ... Cell host & microbe 26 (2), 273-282. e7, 2019 | 123 | 2019 |
| miR-1207-3p regulates the androgen receptor in prostate cancer via FNDC1/fibronectin DK Das, M Naidoo, A Ilboudo, JY Park, T Ali, K Krampis, BD Robinson, ... Experimental cell research 348 (2), 190-200, 2016 | 71 | 2016 |
| Uncovering the biosynthetic potential of rare metagenomic DNA using co-occurrence network analysis of targeted sequences V Libis, N Antonovsky, M Zhang, Z Shang, D Montiel, J Maniko, MA Ternei, ... Nature communications 10 (1), 3848, 2019 | 56 | 2019 |
| Synthetic-bioinformatic natural product antibiotics with diverse modes of action J Chu, B Koirala, N Forelli, X Vila-Farres, MA Ternei, T Ali, DA Colosimo, ... Journal of the American Chemical Society 142 (33), 14158-14168, 2020 | 37 | 2020 |
| Bio-Docklets: virtualization containers for single-step execution of NGS pipelines B Kim, T Ali, C Lijeron, E Afgan, K Krampis Gigascience, 2017 | 22 | 2017 |
| Biosynthetic Interrogation of Soil Metagenomes Reveals Metamarin, an Uncommon Cyclomarin Congener with Activity against Mycobacterium tuberculosis L Li, LW MacIntyre, T Ali, R Russo, B Koirala, Y Hernandez, SF Brady Journal of natural products 84 (4), 1056-1066, 2021 | 20 | 2021 |
| MGS-Fast: Metagenomic shotgun data fast annotation using microbial gene catalogs SM Brown, H Chen, Y Hao, BP Laungani, TA Ali, C Dong, C Lijeron, ... GigaScience 8 (4), giz020, 2019 | 14 | 2019 |
| Visual Omics Explorer (VOE): a cross-platform portal for interactive data visualization B Kim, T Ali, S Hosmer, K Krampis Bioinformatics 32 (13), 2050-2052, 2016 | 11 | 2016 |
| MicroRNA-1205 regulation of FRYL in prostate cancer M Naidoo, F Levine, T Gillot, AT Orunmuyi, EO Olapade-Olaopa, T Ali, ... Frontiers in Cell and Developmental Biology 9, 647485, 2021 | 7 | 2021 |
| Multiscale modeling of the causal functional roles of nsSNPs in a genome-wide association study: application to hypoxia L Xie, C Ng, T Ali, R Valencia, BL Ferreira, V Xue, M Tanweer, D Zhou, ... BMC genomics 14, 1-12, 2013 | 7 | 2013 |
| Fibronectin and androgen receptor expression data in prostate cancer obtained from a RNA-sequencing bioinformatics analysis DK Das, T Ali, K Krampis, OO Ogunwobi Data in brief 11, 131-135, 2017 | 6 | 2017 |
| Multiplexed functional metagenomic analysis of the infant microbiome identifies effectors of NF-κB, autophagy, and cellular redox state FJ Piscotta, ST Whitfield, TG Nakashige, AB Estrela, T Ali, SF Brady Cell Reports 36 (12), 2021 | 5 | 2021 |
| Unraveling function and diversity of bacterial lectins in the human microbiome LJ Cohen, SM Han, P Lau, D Guisado, Y Liang, TG Nakashige, T Ali, ... Nature Communications 13 (1), 3101, 2022 | 4 | 2022 |
| miCloud: A Plug-n-Play, Extensible, On-Premises Bioinformatics Cloud for Seamless Execution of Complex Next-Generation Sequencing Data Analysis Pipelines B Kim, T Ali, C Dong, C Lijeron, R Mazumder, C Wultsch, K Krampis Journal of Computational Biology 26 (3), 280-284, 2019 | 1 | 2019 |
| The Impact of Genomic Variation on Function (IGVF) Consortium I Consortium arXiv preprint arXiv:2307.13708, 2023 | | 2023 |
| Abstract PR09: MicroRNA-1205 regulation of FRYL and aggressive prostate cancer in men of African ancestry MK Naidoo, F Levine, T Gillot, T Ali, K Krampis, A Orunmuyi, ... Cancer Epidemiology, Biomarkers & Prevention 29 (6_Supplement_1), PR09-PR09, 2020 | | 2020 |
| Implementation of a Reproducible, Accessible and Transparent RNA-seq Bioinformatics Pipeline within the Galaxy Platform T Ali, B Kim, C Lijeron, C Dong, C Wultsch, K Krampis Journal of Computer Science & Systems Biology 11, 195-199, 2018 | | 2018 |
| TED toolkit: a comprehensive approach for convenient transcriptomic profiling as a clinically-oriented application T Ali, B Kim, C Lijeron, OO Ogunwobi, R Mazumder, K Krampis PeerJ Preprints, 2017 | | 2017 |
