Melissa Cline

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Mark DiekhansUniversity of California, Santa Cruz; UC Santa Cruz Genomics InstituteVerified email at soe.ucsc.edu
David KulpHarvard Medical SchoolVerified email at hms.harvard.edu
Kevin KarplusProfessor of Biomolecular Engineering, University of California, Santa CruzVerified email at soe.ucsc.edu
Manuel Ares, Jr.University of California, Santa CruzVerified email at ucsc.edu
Ann LoraineUniversity of North Carolina at CharlotteVerified email at uncc.edu
W James KentUC Santa Cruz Genomics Institute, University of California Santa Cruz, UCSC Genome BrowserVerified email at soe.ucsc.edu
Brian RaneyUniversity of California, Santa Cruz, UC Santa Cruz Genomics Institute, UCSC Genome BrowserVerified email at ucsc.edu
Kate RosenbloomUC Santa Cruz Genomics Institute, UCSC Genome BrowserVerified email at soe.ucsc.edu
Angie S. HinrichsUC Santa Cruz Genomics Institute, UCSC Genome BrowserVerified email at soe.ucsc.edu
Hiram ClawsonUC Santa Cruz Genomics Institute, UCSC Genome BrowserVerified email at ucsc.edu
Brooke RheadSenior Statistical Geneticist, TempusVerified email at berkeley.edu
Galt BarberUC Santa Cruz Genomics Institute, UCSC Genome BrowserVerified email at folkplanet.com
Mary J GoldmanUC Santa Cruz Genomics InstituteVerified email at ucsc.edu
Katrina LearnedUC Santa Cruz Genomics Institute, Data Coordinator at UCSC Treehouse Childhood Cancer InitiativeVerified email at ucsc.edu
Richard HugheyProfessor of Computer Engineering and Biomolecular Engineering, University of California Santa CruzVerified email at soe.ucsc.edu
Robert KuhnUC Santa Cruz Genomics Institute, UCSC Genome BrowserVerified email at soe.ucsc.edu
Ann ZweigUCSC Genome Browser, UC Santa Cruz Genomics InstituteVerified email at ucsc.edu
Rachel KarchinProfessor of Biomedical Engineering, Oncology and Computer Science, Johns Hopkins UniversityVerified email at jhu.edu
Maximilian HaeusslerUC Santa Cruz Genomics Institute, UCSC Genome BrowserVerified email at soe.ucsc.edu
Brian LeeUC Santa Cruz Genomics Institute, UCSC Genome BrowserVerified email at soe.ucsc.edu

Melissa Cline

Associate Research Scientist, UC Santa Cruz Genomics Institute

Verified email at ucsc.edu

germline cancer variation cancer genetics alternative splicing


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012	13825	2012
Integration of biological networks and gene expression data using Cytoscape MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ... Nature protocols 2 (10), 2366-2382, 2007	2722	2007
A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014	1897	2014
The UCSC genome browser database: update 2011 PA Fujita, B Rhead, AS Zweig, AS Hinrichs, D Karolchik, MS Cline, ... Nucleic acids research 39 (suppl_1), D876-D882, 2010	1279	2010
Toil enables reproducible, open source, big biomedical data analyses J Vivian, AA Rao, FA Nothaft, C Ketchum, J Armstrong, A Novak, J Pfeil, ... Nature biotechnology 35 (4), 314-316, 2017	987	2017
The UCSC Genome Browser database: extensions and updates 2013 LR Meyer, AS Zweig, AS Hinrichs, D Karolchik, RM Kuhn, M Wong, ... Nucleic acids research 41 (D1), D64-D69, 2012	900	2012
The UCSC genome browser database: 2014 update D Karolchik, GP Barber, J Casper, H Clawson, MS Cline, M Diekhans, ... Nucleic acids research 42 (D1), D764-D770, 2014	771	2014
NetAffx: affymetrix probeset annotations G Liu, AE Loraine, R Shigeta, M Cline, J Cheng, SA Chervitz, D Kulp, ... Proceedings of the 2002 ACM symposium on Applied computing, 147-150, 2002	633	2002
The UCSC genome browser database: 2008 update D Karolchik, RM Kuhn, R Baertsch, GP Barber, H Clawson, M Diekhans, ... Nucleic acids research 36 (suppl_1), D773-D779, 2007	597	2007
Nova regulates brain-specific splicing to shape the synapse J Ule, A Ule, J Spencer, A Williams, JS Hu, M Cline, H Wang, T Clark, ... Nature genetics 37 (8), 844-852, 2005	592	2005
RBPmap: a web server for mapping binding sites of RNA-binding proteins I Paz, I Kosti, M Ares Jr, M Cline, Y Mandel-Gutfreund Nucleic acids research 42 (W1), W361-W367, 2014	484	2014
The UCSC Genome Browser database: extensions and updates 2011 TR Dreszer, D Karolchik, AS Zweig, AS Hinrichs, BJ Raney, RM Kuhn, ... Nucleic acids research 40 (D1), D918-D923, 2012	413	2012
Aberrant alternative splicing and extracellular matrix gene expression in mouse models of myotonic dystrophy H Du, MS Cline, RJ Osborne, DL Tuttle, TA Clark, JP Donohue, MP Hall, ... Nature structural & molecular biology 17 (2), 187-193, 2010	371	2010
An encyclopedia of mouse DNA elements (Mouse ENCODE) Mouse ENCODE Consortium, JA Stamatoyannopoulos, M Snyder, ... Genome biology 13, 1-5, 2012	369	2012
Muscleblind-like 2-mediated alternative splicing in the developing brain and dysregulation in myotonic dystrophy K Charizanis, KY Lee, R Batra, M Goodwin, C Zhang, Y Yuan, L Shiue, ... Neuron 75 (3), 437-450, 2012	365	2012
Integrated molecular characterization of uterine carcinosarcoma AD Cherniack, H Shen, V Walter, C Stewart, BA Murray, R Bowlby, X Hu, ... Cancer cell 31 (3), 411-423, 2017	355	2017
ENCODE whole-genome data in the UCSC Genome Browser: update 2012 KR Rosenbloom, TR Dreszer, JC Long, VS Malladi, CA Sloan, BJ Raney, ... Nucleic acids research 40 (D1), D912-D917, 2012	328	2012
The UCSC cancer genomics browser: update 2015 M Goldman, B Craft, T Swatloski, M Cline, O Morozova, M Diekhans, ... Nucleic acids research 43 (D1), D812-D817, 2015	297	2015
Exploring TCGA pan-cancer data at the UCSC cancer genomics browser MS Cline, B Craft, T Swatloski, M Goldman, S Ma, D Haussler, J Zhu Scientific reports 3 (1), 2652, 2013	289	2013
Alternative splicing regulates mouse embryonic stem cell pluripotency and differentiation N Salomonis, CR Schlieve, L Pereira, C Wahlquist, A Colas, AC Zambon, ... Proceedings of the National Academy of Sciences 107 (23), 10514-10519, 2010	258	2010

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