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Susan Ghaderi
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Year
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0
L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ...
Nature protocols 14 (3), 639-702, 2019
11372019
On efficiency of nonmonotone Armijo-type line searches
M Ahookhosh, S Ghaderi
Applied Mathematical Modelling 43, 170-190, 2017
382017
A new restarting adaptive trust-region method for unconstrained optimization
M Kimiaei, S Ghaderi
Journal of the Operations Research Society of China 5, 487-507, 2017
162017
Two globally convergent nonmonotone trust-region methods for unconstrained optimization
M Ahookhosh, S Ghaderi
Journal of Applied Mathematics and Computing 50, 529-555, 2016
162016
A subspace inertial method for derivative-free nonlinear monotone equations
M Kimiaei, A Hassan Ibrahim, S Ghaderi
Optimization, 1-28, 2023
102023
Structural conserved moiety splitting of a stoichiometric matrix
S Ghaderi, HS Haraldsdóttir, M Ahookhosh, S Arreckx, RMT Fleming
Journal of Theoretical Biology 499, 110276, 2020
62020
Smoothing unadjusted Langevin algorithms for nonsmooth composite potential functions
S Ghaderi, M Ahookhosh, A Arany, A Skupin, P Patrinos, Y Moreau
Applied Mathematics and Computation 464, 128377, 2024
22024
Mathematical Approaches to Biological Complexity in Systems Biomedicine
S Ghaderi
Unilu-University of Luxembourg, Esch-sur-Alzette, Luxembourg, 2021
12021
Non-Smooth Unadjusted Langevin Algorithms Via Forward-Backward Envelope
S Ghaderi, M Ahookhosh, A Skupin, Y Moreau
SIAM Conference on Optimization (OP21), 2021
2021
DiBAC: Distribution-Based Analysis of Cell Differentiation Identifies Mechanisms of Cell Fate
S Ghaderi, S Magni, T Arns, T Ignac, A Skupin
Available at SSRN 3920667, 2021
2021
Developing computational measures to track critical state transitions during biological cell fate-decision
S Ghaderi, S Magni, T Ignic, A Skupin
Workshop on Critical Transitions in Complex Systems, Imperial College …, 2018
2018
Decomposition of the mitochondrial metabolic network based on atom mapping data
GA Preciat Gonzalez, HS Haraldsdottir, J Zagare, Alise, Modamio, ...
Metabolic Pathway Analysis 2017, Montana state University, USA, 2017
2017
Mathematical Properties Of Stoichiometric Matrices
S Ghaderi, HS Haraldsdottir, M Ahookhosh, S Arreckx, RMT Fleming
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