Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0 L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ... Nature protocols 14 (3), 639-702, 2019 | 1137 | 2019 |
On efficiency of nonmonotone Armijo-type line searches M Ahookhosh, S Ghaderi Applied Mathematical Modelling 43, 170-190, 2017 | 38 | 2017 |
A new restarting adaptive trust-region method for unconstrained optimization M Kimiaei, S Ghaderi Journal of the Operations Research Society of China 5, 487-507, 2017 | 16 | 2017 |
Two globally convergent nonmonotone trust-region methods for unconstrained optimization M Ahookhosh, S Ghaderi Journal of Applied Mathematics and Computing 50, 529-555, 2016 | 16 | 2016 |
A subspace inertial method for derivative-free nonlinear monotone equations M Kimiaei, A Hassan Ibrahim, S Ghaderi Optimization, 1-28, 2023 | 10 | 2023 |
Structural conserved moiety splitting of a stoichiometric matrix S Ghaderi, HS Haraldsdóttir, M Ahookhosh, S Arreckx, RMT Fleming Journal of Theoretical Biology 499, 110276, 2020 | 6 | 2020 |
Smoothing unadjusted Langevin algorithms for nonsmooth composite potential functions S Ghaderi, M Ahookhosh, A Arany, A Skupin, P Patrinos, Y Moreau Applied Mathematics and Computation 464, 128377, 2024 | 2 | 2024 |
Mathematical Approaches to Biological Complexity in Systems Biomedicine S Ghaderi Unilu-University of Luxembourg, Esch-sur-Alzette, Luxembourg, 2021 | 1 | 2021 |
Non-Smooth Unadjusted Langevin Algorithms Via Forward-Backward Envelope S Ghaderi, M Ahookhosh, A Skupin, Y Moreau SIAM Conference on Optimization (OP21), 2021 | | 2021 |
DiBAC: Distribution-Based Analysis of Cell Differentiation Identifies Mechanisms of Cell Fate S Ghaderi, S Magni, T Arns, T Ignac, A Skupin Available at SSRN 3920667, 2021 | | 2021 |
Developing computational measures to track critical state transitions during biological cell fate-decision S Ghaderi, S Magni, T Ignic, A Skupin Workshop on Critical Transitions in Complex Systems, Imperial College …, 2018 | | 2018 |
Decomposition of the mitochondrial metabolic network based on atom mapping data GA Preciat Gonzalez, HS Haraldsdottir, J Zagare, Alise, Modamio, ... Metabolic Pathway Analysis 2017, Montana state University, USA, 2017 | | 2017 |
Mathematical Properties Of Stoichiometric Matrices S Ghaderi, HS Haraldsdottir, M Ahookhosh, S Arreckx, RMT Fleming | | |