Mohammed El-Kebir
Mohammed El-Kebir
Assistant Professor
Verified email at illinois.edu - Homepage
Title
Cited by
Cited by
Year
Computational pan-genomics: status, promises and challenges
Briefings in bioinformatics 19 (1), 118-135, 2018
1592018
Multiscale computational modeling reveals a critical role for TNF-α receptor 1 dynamics in tuberculosis granuloma formation
M Fallahi-Sichani, M El-Kebir, S Marino, DE Kirschner, JJ Linderman
The Journal of Immunology 186 (6), 3472-3483, 2011
1572011
Reconstruction of clonal trees and tumor composition from multi-sample sequencing data
M El-Kebir, L Oesper, H Acheson-Field, BJ Raphael
Bioinformatics 31 (12), i62-i70, 2015
1322015
Charge group partitioning in biomolecular simulation
S Canzar, M El-Kebir, R Pool, K Elbassioni, AK Malde, AE Mark, ...
Journal of Computational Biology 20 (3), 188-198, 2013
1322013
Inferring the mutational history of a tumor using multi-state perfect phylogeny mixtures
M El-Kebir, G Satas, L Oesper, BJ Raphael
Cell systems 3 (1), 43-53, 2016
942016
A hybrid multi-compartment model of granuloma formation and T cell priming in tuberculosis
S Marino, M El-Kebir, D Kirschner
Journal of theoretical biology 280 (1), 50-62, 2011
812011
Lagrangian relaxation applied to sparse global network alignment
M El-Kebir, J Heringa, GW Klau
IAPR International Conference on Pattern Recognition in Bioinformatics, 225-236, 2011
612011
Inferring parsimonious migration histories for metastatic cancers
M El-Kebir, G Satas, BJ Raphael
Nature genetics 2, 5, 2018
522018
SPhyR: tumor phylogeny estimation from single-cell sequencing data under loss and error
M El-Kebir
Bioinformatics 34 (17), i671-i679, 2018
382018
Complexity and algorithms for copy-number evolution problems
M El-Kebir, BJ Raphael, R Shamir, R Sharan, S Zaccaria, M Zehavi, ...
Algorithms for Molecular Biology 12 (1), 13, 2017
32*2017
Phylogenetic copy-number factorization of multiple tumor samples
S Zaccaria, M El-Kebir, GW Klau, BJ Raphael
Journal of Computational Biology 25 (7), 689-708, 2018
26*2018
eXamine: Exploring annotated modules in networks
K Dinkla, M El-Kebir, CI Bucur, M Siderius, MJ Smit, MA Westenberg, ...
BMC bioinformatics 15 (1), 1-14, 2014
262014
Solving the maximum-weight connected subgraph problem to optimality
M El-Kebir, GW Klau
arXiv preprint arXiv:1409.5308, 2014
232014
Natalie 2.0: Sparse global network alignment as a special case of quadratic assignment
M El-Kebir, J Heringa, GW Klau
Algorithms 8 (4), 1035-1051, 2015
212015
Implications of non-uniqueness in phylogenetic deconvolution of bulk DNA samples of tumors
Y Qi, D Pradhan, M El-Kebir
Algorithms for Molecular Biology 14 (1), 19, 2019
18*2019
metaModules identifies key functional subnetworks in microbiome-related disease
A May, BW Brandt, M El-Kebir, GW Klau, E Zaura, W Crielaard, J Heringa, ...
Bioinformatics 32 (11), 1678-1685, 2016
182016
Computational modeling of tuberculous meningitis reveals an important role for tumor necrosis factor-α
M El-Kebir, M Van der Kuip, AM Van Furth, DE Kirschner
Journal of theoretical biology 328, 43-53, 2013
122013
A mathematical programming approach to marker-assisted gene pyramiding
S Canzar, M El-Kebir
International Workshop on Algorithms in Bioinformatics, 26-38, 2011
112011
Anytime classification by ontology approximation
S Schlobach, E Blaauw, M El Kebir, A Ten Teije, F Van Harmelen, ...
Proceedings of the First International Conference on New Forms of Reasoning …, 2007
112007
xHeinz: an algorithm for mining cross-species network modules under a flexible conservation model
M El-Kebir, H Soueidan, T Hume, D Beisser, M Dittrich, T Müller, G Blin, ...
Bioinformatics 31 (19), 3147-3155, 2015
102015
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