MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging D Schapiro, A Sokolov, C Yapp, YA Chen, JL Muhlich, J Hess, ... Nature methods 19 (3), 311-315, 2022 | 121 | 2022 |
Multiplexed 3D atlas of state transitions and immune interaction in colorectal cancer JR Lin, S Wang, S Coy, YA Chen, C Yapp, M Tyler, MK Nariya, CN Heiser, ... Cell 186 (2), 363-381. e19, 2023 | 101 | 2023 |
The botanical drug substance crofelemer as a model system for comparative characterization of complex mixture drugs PA Kleindl, J Xiong, A Hewarathna, O Mozziconacci, MK Nariya, ... Journal of pharmaceutical sciences 106 (11), 3242-3256, 2017 | 17 | 2017 |
Mathematical model for length control by the timing of substrate switching in the type III secretion system MK Nariya, J Israeli, JJ Shi, EJ Deeds PLoS computational biology 12 (4), e1004851, 2016 | 11 | 2016 |
Chemical stability of the botanical drug substance crofelemer: a model system for comparative characterization of complex mixture drugs A Hewarathna, O Mozziconacci, MK Nariya, PA Kleindl, J Xiong, ... Journal of pharmaceutical sciences 106 (11), 3257-3269, 2017 | 9 | 2017 |
Comparative characterization of crofelemer samples using data mining and machine learning approaches with analytical stability data sets MK Nariya, JH Kim, J Xiong, PA Kleindl, A Hewarathna, AC Fisher, ... Journal of pharmaceutical sciences 106 (11), 3270-3279, 2017 | 7 | 2017 |
Proteomic profiling across breast cancer cell lines and models M Kalocsay, MJ Berberich, RA Everley, MK Nariya, M Chung, B Gaudio, ... Scientific Data 10 (1), 514, 2023 | 4 | 2023 |
Crosstalk and ultrasensitivity in protein degradation pathways A Mallela, MK Nariya, EJ Deeds PLoS Computational Biology 16 (12), e1008492, 2020 | 4 | 2020 |
Robustness and the evolution of length control strategies in the T3SS and flagellar hook MK Nariya, A Mallela, JJ Shi, EJ Deeds Biophysical Journal 120 (17), 3820-3830, 2021 | 2 | 2021 |
Unraveling the oscillatory dynamics of mRNA metabolism and chromatin accessibility during the cell cycle through integration of single-cell multiomic data MK Nariya, D Santiago-Algarra, O Tassy, M Cerciat, T Ye, A Riba, ... bioRxiv, 2024.01. 11.575159, 2024 | | 2024 |
Paired evaluation of machine-learning models characterizes effects of confounders and outliers MK Nariya, CE Mills, PK Sorger, A Sokolov Patterns 4 (8), 2023 | | 2023 |
Paired evaluation defines performance landscapes for machine learning models MK Nariya, CE Mills, PK Sorger, A Sokolov bioRxiv, 2022.09. 07.507020, 2022 | | 2022 |
Proteomic profiling of breast cancer cell lines and models M Kalocsay, M Berberich, R Everley, M Nariya, M Chung, B Gaudio, ... | | 2020 |
Robustness and the evolution of length control strategies in the type III secretion system and flagellar hook MK Nariya, A Mallela, JJ Shi, EJ Deeds bioRxiv, 766733, 2019 | | 2019 |
Mathematical Modeling of Length Control in the Type III Secretion System M Nariya University of Kansas, 2018 | | 2018 |