| Identifying cryptic diversity with predictive phylogeography A Espíndola, M Ruffley, ML Smith, BC Carstens, DC Tank, J Sullivan Proceedings of the Royal Society B: Biological Sciences 283 (1841), 20161529, 2016 | 47 | 2016 |
| Demographic model selection using random forests and the site frequency spectrum ML Smith, M Ruffley, A Espíndola, DC Tank, J Sullivan, BC Carstens Molecular Ecology 26 (17), 4562-4573, 2017 | 45 | 2017 |
| Unifying macroecology and macroevolution to answer fundamental questions about biodiversity BJ McGill, JM Chase, J Hortal, I Overcast, AJ Rominger, J Rosindell, ... Global Ecology and Biogeography 28 (12), 1925-1936, 2019 | 32 | 2019 |
| Identifying models of trait‐mediated community assembly using random forests and approximate Bayesian computation M Ruffley, K Peterson, B Week, DC Tank, LJ Harmon Ecology and Evolution 9 (23), 13218-13230, 2019 | 14 | 2019 |
| Testing for the presence of cryptic diversity in tail-dropper slugs (Prophysaon) using molecular data ML Smith, M Ruffley, AM Rankin, A Espíndola, DC Tank, J Sullivan, ... Biological Journal of the Linnean Society 124 (3), 518-532, 2018 | 14 | 2018 |
| Combining allele frequency and tree‐based approaches improves phylogeographic inference from natural history collections M Ruffley, ML Smith, A Espíndola, BC Carstens, J Sullivan, DC Tank Molecular ecology 27 (4), 1012-1024, 2018 | 13 | 2018 |
| Integrating life history traits into predictive phylogeography J Sullivan, ML Smith, A Espíndola, M Ruffley, A Rankin, D Tank, ... Molecular ecology 28 (8), 2062-2073, 2019 | 12 | 2019 |
| A unified model of species abundance, genetic diversity, and functional diversity reveals the mechanisms structuring ecological communities I Overcast, M Ruffley, J Rosindell, L Harmon, PAV Borges, BC Emerson, ... Molecular Ecology Resources 21 (8), 2782-2800, 2021 | 11 | 2021 |
| Quantifying the scale of genetic diversity extinction in the Anthropocene M Exposito-Alonso, TA Booker, L Czech, T Fukami, L Gillespie, S Hateley, ... bioRxiv, 2021 | 3 | 2021 |
| From coral reefs to Joshua trees: What ecological interactions teach us about the adaptive capacity of biodiversity in the Anthropocene KM Lagerstrom, S Vance, BH Cornwell, M Ruffley, T Bellagio, ... Philosophical Transactions of the Royal Society B 377 (1857), 20210389, 2022 | 1 | 2022 |
| An Image is Worth a Thousand Species: Scaling high-resolution plant biodiversity prediction to biome-level using citizen science data and remote sensing imagery L Gillespie, M Ruffley, M Expósito-Alonso Biodiversity Information Science and Standards 5, e74052, 2021 | 1 | 2021 |
| Genomic evidence of an ancient Inland Temperate Rainforest M Ruffley, M Smith, A Espindola, D Turck, N Mitchell, B Carstens, ... Authorea Preprints, 2021 | 1 | 2021 |
| Detecting the ecological footprint of selection J Luiselli, I Overcast, A Rominger, M Ruffley, H Morlon, J Rosindell bioRxiv, 2021 | 1 | 2021 |
| Genomic evidence of an ancient inland temperate rainforest in the Pacific Northwest of North America M Ruffley, ML Smith, A Espíndola, DF Turck, N Mitchell, B Carstens, ... Molecular Ecology, 2022 | | 2022 |
| Detecting Ecosystem Turnover and Realized Niches Using Remote Sensing Data, Citizen Science Observations and Deep Convolutional Neural Networks L Gillespie, M Ruffley, M Exposito-Alonso AGU Fall Meeting Abstracts 2021, B12A-07, 2021 | | 2021 |
| Phylogenetic diversity and community assembly in a naturally fragmented system K Peterson, M Ruffley, CE Parent Ecology and evolution 11 (24), 18066-18080, 2021 | | 2021 |
| Unifying macroecology and macroevolution to answer fundamental questions about biodiversity (vol 28, pg 1925, 2019) BJ McGill, JM Chase, J Hortal, I Overcast, AJ Rominger, J Rosindell, ... GLOBAL ECOLOGY AND BIOGEOGRAPHY 29 (6), 1095-1095, 2020 | | 2020 |
| Comparative Phylogeography and Community Ecology Reveal Evolutionary Processes That Contribute to Ecosystem Structure through Time MR Ruffley University of Idaho, 2020 | | 2020 |
| NOTEWORTHY COLLECTION M Ruffley, SJ Jacobs, G Johnson, S Mortimer, DC Tank Madroño 65 (4), 157-158, 2019 | | 2019 |
| Idaho M Ruffley, SJ Jacobs, G Johnson, S Mortimer, DC Tank Madroño 65 (4), 157-158, 2018 | | 2018 |
