| MetaNetX/MNXref–reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks S Moretti, O Martin, VDT Tran, A Bridge, A Morgat, M Pagni Nucleic Acids Research 44 (D1), D523-D526, 2015 | 168 | 2015 |
| MetaNetX/MNXref: unified namespace for metabolites and biochemical reactions in the context of metabolic models S Moretti, VDT Tran, F Mehl, M Ibberson, M Pagni Nucleic acids research 49 (D1), D570-D574, 2021 | 101 | 2021 |
| RNA enrichment method for quantitative transcriptional analysis of pathogens in vivo applied to the fungus Candida albicans S Amorim-Vaz, VDT Tran, S Pradervand, M Pagni, AT Coste, D Sanglard mBio 6 (5), e00942-15, 2015 | 78 | 2015 |
| Comparative Genomics of Two Sequential Candida glabrate Clinical Isolates L Vale-Silva, E Beaudoing, VDT Tran, D Sanglard G3: Genes, Genomes, Genetics, g3. 117.042887, 2017 | 65 | 2017 |
| The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases SIB Swiss Institute of Bioinformatics Members Nucleic acids research 44 (D1), D27-D37, 2016 | 51 | 2016 |
| miRBoost: boosting support vector machines for microRNA precursor classification VDT Tran, S Tempel, B Zerath, F Zehraoui, F Tahi RNA 21 (5), 775-785, 2015 | 51 | 2015 |
| Persistence of Candida albicans in the Oral Mucosa Induces a Curbed Inflammatory Host Response That Is Independent of Immunosuppression FR Kirchner, K Littringer, S Altmeier, VDT Tran, F Schoenherr, C Lemberg, ... Frontiers in immunology 10, 330, 2019 | 47 | 2019 |
| RNA sequencing-based genome reannotation of the dermatophyte VDT Tran, N De Coi, M Feuermann, E Schmid-Siegert, ET Bagut, ... mSystems 1 (4), e00036-16, 2016 | 34* | 2016 |
| Anti-adipogenic signals at the onset of obesity-related inflammation in white adipose tissue T Caputo, VDT Tran, N Bararpour, C Winkler, G Aguileta, KB Trang, ... Cellular and Molecular Life Sciences 78, 227-247, 2021 | 31 | 2021 |
| Detection of generic differential RNA processing events from RNA-seq data VDT Tran, O Souiai, N Romero-Barrios, M Crespi, D Gautheret RNA biology 13 (1), 59-67, 2016 | 23 | 2016 |
| Candida albicans commensalism in the oral mucosa is favoured by limited virulence and metabolic adaptation C Lemberg, K Martinez de San Vicente, R Fróis-Martins, S Altmeier, ... PLoS Pathogens 18 (4), e1010012, 2022 | 17 | 2022 |
| Condition-specific series of metabolic sub-networks and its application for gene set enrichment analysis VDT Tran, S Moretti, AT Coste, S Amorim-Vaz, D Sanglard, M Pagni Bioinformatics 35 (13), 2258-2266, 2019 | 16 | 2019 |
| A graph-theoretic approach for classification and structure prediction of transmembrane β-barrel proteins VDT Tran, P Chassignet, S Sheikh, JM Steyaert BMC genomics 13, 1-18, 2012 | 15 | 2012 |
| In Silico Prediction of RNA Secondary Structure F Tahi, VDT Tran, A Boucheham Promoter Associated RNA: Methods and Protocols, 145-168, 2017 | 13 | 2017 |
| Using in vivo transcriptomics and RNA enrichment to identify genes involved in virulence of Candida glabrata S Schrevens, E Durandau, VDT Tran, D Sanglard Virulence 13 (1), 1285-1303, 2022 | 10 | 2022 |
| Comparative genomics of two sequential Candida glabrata clinical isolates. G3 (Bethesda) 7: 2413–2426 L Vale-Silva, E Beaudoing, VDT Tran, D Sanglard | 10 | 2017 |
| An in vitro approach to understand contribution of kidney cells to human urinary extracellular vesicles K Barreiro, AC Lay, G Leparc, VDT Tran, M Rosler, L Dayalan, F Burdet, ... Journal of Extracellular Vesicles 12 (2), 12304, 2023 | 7 | 2023 |
| Prediction of permuted super-secondary structures in β-barrel proteins VDT Tran, P Chassignet, JM Steyaert Proceedings of the 2011 ACM Symposium on Applied Computing, 110-111, 2011 | 7 | 2011 |
| RNA Enrichment method for quantitative transcriptional analysis of pathogens S Amorim-Vaz, VDT Tran, S Pradervand, M Pagni, AT Coste, D Sanglard vivo, 2015 | 5 | 2015 |
| Prediction of super-secondary structure in α-helical and β-barrel transmembrane proteins VDT Tran, P Chassignet, JM Steyaert BMC Bioinformatics 10 (Suppl 13), O3, 2009 | 4 | 2009 |
Marco PagniVitaI-IT group, SIB Swiss Institute of BioinformaticsVerified email at sib.swiss
