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Ryan Wick
Ryan Wick
Verified email at monash.edu - Homepage
Title
Cited by
Cited by
Year
Unicycler: resolving bacterial genome assemblies from short and long sequencing reads
RR Wick, LM Judd, CL Gorrie, KE Holt
PLoS computational biology 13 (6), e1005595, 2017
30172017
Bandage: interactive visualization of de novo genome assemblies
RR Wick, MB Schultz, J Zobel, KE Holt
Bioinformatics 31 (20), 3350-3352, 2015
10702015
Performance of neural network basecalling tools for Oxford Nanopore sequencing
RR Wick, LM Judd, KE Holt
Genome biology 20 (1), 1-10, 2019
5062019
Completing bacterial genome assemblies with multiplex MinION sequencing
RR Wick, LM Judd, CL Gorrie, KE Holt
Microbial genomics 3 (10), 2017
405*2017
Identification of Klebsiella capsule synthesis loci from whole genome data
KL Wyres, RR Wick, C Gorrie, A Jenney, R Follador, NR Thomson, ...
Microbial genomics 2 (12), 2016
318*2016
Gastrointestinal carriage is a major reservoir of Klebsiella pneumoniae infection in intensive care patients
CL Gorrie, M Mirčeta, RR Wick, DJ Edwards, NR Thomson, RA Strugnell, ...
Clinical infectious diseases 65 (2), 208-215, 2017
3072017
Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations
MMC Lam, RR Wick, KL Wyres, CL Gorrie, LM Judd, AWJ Jenney, ...
Microbial genomics 4 (9), 2018
2092018
Kaptive Web: user-friendly capsule and lipopolysaccharide serotype prediction for Klebsiella genomes
RR Wick, E Heinz, KE Holt, KL Wyres
Journal of clinical microbiology 56 (6), e00197-18, 2018
1642018
Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae
KL Wyres, RR Wick, LM Judd, R Froumine, A Tokolyi, CL Gorrie, ...
PLoS genetics 15 (4), e1008114, 2019
1502019
Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes
N De Maio, LP Shaw, A Hubbard, S George, ND Sanderson, J Swann, ...
Microbial genomics 5 (9), 2019
1462019
Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination
M Lam, KL Wyres, S Duchêne, RR Wick, LM Judd, YH Gan, CH Hoh, ...
Nature communications 9 (1), 1-10, 2018
1422018
Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks
RR Wick, LM Judd, KE Holt
PLoS computational biology 14 (11), e1006583, 2018
1392018
A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex
M Lam, RR Wick, SC Watts, LT Cerdeira, KL Wyres, KE Holt
Nature communications 12 (1), 1-16, 2021
124*2021
Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307
KL Wyres, J Hawkey, MAK Hetland, A Fostervold, RR Wick, LM Judd, ...
Journal of Antimicrobial Chemotherapy 74 (3), 577-581, 2019
1142019
Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae
M Lam, KL Wyres, LM Judd, RR Wick, A Jenney, S Brisse, KE Holt
Genome medicine 10 (1), 1-15, 2018
1132018
Microbial mercury methylation in Antarctic sea ice
CM Gionfriddo, MT Tate, RR Wick, MB Schultz, A Zemla, MP Thelen, ...
Nature microbiology 1 (10), 1-12, 2016
1122016
ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data
J Hawkey, M Hamidian, RR Wick, DJ Edwards, H Billman-Jacobe, ...
BMC genomics 16 (1), 1-11, 2015
1122015
Benchmarking of long-read assemblers for prokaryote whole genome sequencing
RR Wick, KE Holt
F1000Research 8, 2019
1012019
Antimicrobial-Resistant Klebsiella pneumoniae Carriage and Infection in Specialized Geriatric Care Wards Linked to Acquisition in the Referring Hospital
CL Gorrie, M Mirceta, RR Wick, LM Judd, KL Wyres, NR Thomson, ...
Clinical infectious diseases 67 (2), 161-170, 2018
892018
Porechop
R Wick
Github https://github.com/rrwick/Porechop, 2017
892017
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Articles 1–20