Jacqueline A. Keane
Jacqueline A. Keane
Pathogen Genomics IT Consultant
Verified email at cambridgebioinformatics.com - Homepage
Title
Cited by
Cited by
Year
Roary: rapid large-scale prokaryote pan genome analysis
AJ Page, CA Cummins, M Hunt, VK Wong, S Reuter, MTG Holden, ...
Bioinformatics 31 (22), 3691-3693, 2015
18932015
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
NJ Croucher, AJ Page, TR Connor, AJ Delaney, JA Keane, SD Bentley, ...
Nucleic acids research 43 (3), e15-e15, 2015
10212015
Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data
T Carver, SR Harris, M Berriman, J Parkhill, JA McQuillan
Bioinformatics 28 (4), 464-469, 2012
7712012
The genomes of four tapeworm species reveal adaptations to parasitism
IJ Tsai, M Zarowiecki, N Holroyd, A Garciarrubio, A Sanchez-Flores, ...
Nature 496 (7443), 57-63, 2013
5942013
Circlator: automated circularization of genome assemblies using long sequencing reads
M Hunt, N De Silva, TD Otto, J Parkhill, JA Keane, SR Harris
Genome biology 16 (1), 1-10, 2015
4962015
SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments
AJ Page, B Taylor, AJ Delaney, J Soares, T Seemann, JA Keane, ...
Microbial genomics 2 (4), 2016
4072016
Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter-and intracontinental transmission events
VK Wong, S Baker, DJ Pickard, J Parkhill, AJ Page, NA Feasey, ...
Nature genetics 47 (6), 632-639, 2015
3602015
ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads
M Hunt, AE Mather, L Sánchez-Busó, AJ Page, J Parkhill, JA Keane, ...
Microbial genomics 3 (10), 2017
3052017
GeneDB—an annotation database for pathogens
FJ Logan-Klumpler, N De Silva, U Boehme, MB Rogers, G Velarde, ...
Nucleic acids research 40 (D1), D98-D108, 2012
2552012
Comparative genomics of the fungal pathogens Candida dubliniensis and Candida albicans
AP Jackson, JA Gamble, T Yeomans, GP Moran, D Saunders, D Harris, ...
Genome research 19 (12), 2231-2244, 2009
2332009
Epithelial IL-22RA1-mediated fucosylation promotes intestinal colonization resistance to an opportunistic pathogen
TAN Pham, S Clare, D Goulding, JM Arasteh, MD Stares, HP Browne, ...
Cell host & microbe 16 (4), 504-516, 2014
2102014
Optimal enzymes for amplifying sequencing libraries
MA Quail, TD Otto, Y Gu, SR Harris, TF Skelly, JA McQuillan, ...
Nature methods 9 (1), 10-11, 2012
1952012
Robust high-throughput prokaryote de novo assembly and improvement pipeline for Illumina data
AJ Page, N De Silva, M Hunt, MA Quail, J Parkhill, SR Harris, TD Otto, ...
Microbial genomics 2 (8), 2016
1702016
Antigenic diversity is generated by distinct evolutionary mechanisms in African trypanosome species
AP Jackson, A Berry, M Aslett, HC Allison, P Burton, J Vavrova-Anderson, ...
Proceedings of the National Academy of Sciences 109 (9), 3416-3421, 2012
1442012
The Genome Sequence of Trypanosoma brucei gambiense, Causative Agent of Chronic Human African Trypanosomiasis
AP Jackson, M Sanders, A Berry, J McQuillan, MA Aslett, MA Quail, ...
PLoS Neglected Tropical Diseases 4 (4), e658, 2010
1432010
IVA: accurate de novo assembly of RNA virus genomes
M Hunt, A Gall, SH Ong, J Brener, B Ferns, P Goulder, E Nastouli, ...
Bioinformatics 31 (14), 2374-2376, 2015
1322015
The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries
L Barquist, M Mayho, C Cummins, AK Cain, CJ Boinett, AJ Page, ...
Bioinformatics 32 (7), 1109-1111, 2016
942016
An extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid
VK Wong, S Baker, TR Connor, D Pickard, AJ Page, J Dave, N Murphy, ...
Nature communications 7 (1), 1-11, 2016
912016
A Deep Sequencing Approach to Comparatively Analyze the Transcriptome of Lifecycle Stages of the Filarial Worm, Brugia malayi
YJ Choi, E Ghedin, M Berriman, J McQuillan, N Holroyd, GF Mayhew, ...
PLoS neglected tropical diseases 5 (12), e1409, 2011
862011
BamView: visualizing and interpretation of next-generation sequencing read alignments
T Carver, SR Harris, TD Otto, M Berriman, J Parkhill, JA McQuillan
Briefings in bioinformatics 14 (2), 203-212, 2013
672013
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