Sonja Prohaska
Sonja Prohaska
Professor of Computational EvoDevo, Leipzig University
Verified email at
Cited by
Cited by
Proteinortho: detection of (co-) orthologs in large-scale analysis
M Lechner, S Findeiß, L Steiner, M Marz, PF Stadler, SJ Prohaska
BMC bioinformatics 12 (1), 124, 2011
The African coelacanth genome provides insights into tetrapod evolution
CT Amemiya, J Alföldi, AP Lee, S Fan, H Philippe, I MacCallum, I Braasch, ...
Nature 496 (7445), 311, 2013
Ecological plant epigenetics: Evidence from model and non‐model species, and the way forward
CL Richards, C Alonso, C Becker, O Bossdorf, E Bucher, ...
Ecology letters 20 (12), 1576-1590, 2017
Evolution of vault RNAs
PF Stadler, JJL Chen, J Hackermüller, S Hoffmann, F Horn, P Khaitovich, ...
Molecular biology and evolution 26 (9), 1975-1991, 2009
Noisy: identification of problematic columns in multiple sequence alignments
AWM Dress, C Flamm, G Fritzsch, S Grünewald, M Kruspe, SJ Prohaska, ...
Algorithms for Molecular Biology 3 (1), 7, 2008
Bichir HoxA cluster sequence reveals surprising trends in ray-finned fish genomic evolution
C Chiu, K Dewar, GP Wagner, K Takahashi, F Ruddle, C Ledje, P Bartsch, ...
Genome research 14 (1), 11-17, 2004
Orthology detection combining clustering and synteny for very large datasets
M Lechner, M Hernandez-Rosales, D Doerr, N Wieseke, A Thévenin, ...
PLoS One 9 (8), e105015, 2014
Independent Hox‐cluster duplications in lampreys
C Fried, SJ Prohaska, PF Stadler
Journal of Experimental Zoology Part B: Molecular and Developmental …, 2003
Genomic organization of eukaryotic tRNAs
C Bermudez-Santana, CSO Attolini, T Kirsten, J Engelhardt, SJ Prohaska, ...
BMC genomics 11 (1), 270, 2010
Evolutionary patterns of non-coding RNAs
AF Bompfünewerer, C Flamm, C Fried, G Fritzsch, IL Hofacker, ...
Theory in Biosciences 123 (4), 301-369, 2005
The CHR site: definition and genome-wide identification of a cell cycle transcriptional element
GA Müller, A Wintsche, K Stangner, SJ Prohaska, PF Stadler, K Engeland
Nucleic acids research 42 (16), 10331-10350, 2014
Evidence for independent Hox gene duplications in the hagfish lineage: a PCR-based gene inventory of Eptatretus stoutii
PF Stadler, C Fried, SJ Prohaska, WJ Bailey, BY Misof, FH Ruddle, ...
Molecular phylogenetics and evolution 32 (3), 686-694, 2004
RNAs everywhere: genome‐wide annotation of structured RNAs
R Backofen, SH Bernhart, C Flamm, C Fried, G Fritzsch, J Hackermüller, ...
Journal of Experimental Zoology Part B: Molecular and Developmental …, 2007
Multiple sequence alignment with user-defined anchor points
B Morgenstern, SJ Prohaska, D Pöhler, PF Stadler
Algorithms for Molecular Biology 1 (1), 6, 2006
The challenges and scope of theoretical biology
DC Krakauer, JP Collins, D Erwin, JC Flack, W Fontana, MD Laubichler, ...
Journal of theoretical biology 276 (1), 269-276, 2011
Kiwi genome provides insights into evolution of a nocturnal lifestyle
D Le Duc, G Renaud, A Krishnan, MS Almén, L Huynen, SJ Prohaska, ...
Genome biology 16 (1), 147, 2015
Complete HOX cluster characterization of the coelacanth provides further evidence for slow evolution of its genome
CT Amemiya, TP Powers, SJ Prohaska, J Grimwood, J Schmutz, ...
Proceedings of the National Academy of Sciences 107 (8), 3622-3627, 2010
The amphioxus Hox cluster: characterization, comparative genomics, and evolution
CT Amemiya, SJ Prohaska, A Hill‐Force, A Cook, J Wasserscheid, ...
Journal of Experimental Zoology Part B: Molecular and Developmental …, 2008
Innovation in gene regulation: the case of chromatin computation
SJ Prohaska, PF Stadler, DC Krakauer
Journal of theoretical biology 265 (1), 27-44, 2010
The duplication of the Hox gene clusters in teleost fishes
SJ Prohaska, PF Stadler
Theory in Biosciences 123 (1), 89-110, 2004
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