Bill Andreopoulos
Bill Andreopoulos
Data scientist, DOE Joint Genome Institute, Lawrence Berkeley National Lab
Bestätigte E-Mail-Adresse bei lbl.gov
Titel
Zitiert von
Zitiert von
Jahr
Data classification
CC Aggarwal
Data Mining, 285-344, 2015
20612015
A roadmap of clustering algorithms: finding a match for a biomedical application
B Andreopoulos, A An, X Wang, M Schroeder
Briefings in bioinformatics 10 (3), 297-314, 2009
2502009
Widespread adenine N6-methylation of active genes in fungi
SJ Mondo, RO Dannebaum, RC Kuo, KB Louie, AJ Bewick, K LaButti, ...
Nature genetics 49 (6), 964-968, 2017
1682017
Unraveling protein networks with power graph analysis
L Royer, M Reimann, B Andreopoulos, M Schroeder
PLoS Comput Biol 4 (7), e1000108, 2008
1622008
Megaphylogeny resolves global patterns of mushroom evolution
T Varga, K Krizsán, C Földi, B Dima, M Sánchez-García, ...
Nature ecology & evolution 3 (4), 668-678, 2019
752019
Leveraging single-cell genomics to expand the fungal tree of life
SR Ahrendt, CA Quandt, D Ciobanu, A Clum, A Salamov, B Andreopoulos, ...
Nature microbiology 3 (12), 1417-1428, 2018
562018
Next generation sequencing data of a defined microbial mock community
E Singer, B Andreopoulos, RM Bowers, J Lee, S Deshpande, J Chiniquy, ...
Scientific data 3 (1), 1-8, 2016
532016
Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy
D Alexopoulou, B Andreopoulos, H Dietze, A Doms, F Gandon, ...
BMC bioinformatics 10 (1), 1-15, 2009
452009
101 Dothideomycetes genomes: a test case for predicting lifestyles and emergence of pathogens
S Haridas, R Albert, M Binder, J Bloem, K LaButti, A Salamov, ...
Studies in mycology 96, 141-153, 2020
412020
Clustering large software systems at multiple layers
B Andreopoulos, A An, V Tzerpos, X Wang
Information and Software Technology 49 (3), 244-254, 2007
392007
Clustering by common friends finds locally significant proteins mediating modules
B Andreopoulos, A An, X Wang, M Faloutsos, M Schroeder
Bioinformatics 23 (9), 1124-1131, 2007
372007
Hierarchical density-based clustering of categorical data and a simplification
B Andreopoulos, A An, X Wang
Pacific-Asia Conference on Knowledge Discovery and Data Mining, 11-22, 2007
342007
Word sense disambiguation in biomedical ontologies with term co-occurrence analysis and document clustering
B Andreopoulos, D Alexopoulou, M Schroeder
International journal of data mining and bioinformatics 2 (3), 193-215, 2008
322008
Phage-specific metabolic reprogramming of virocells
C Howard-Varona, MM Lindback, GE Bastien, N Solonenko, AA Zayed, ...
The ISME journal 14 (4), 881-895, 2020
312020
Gopubmed: Exploring pubmed with ontological background knowledge
H Dietze, D Alexopoulou, MR Alvers, L Barrio-Alvers, B Andreopoulos, ...
Bioinformatics for Systems Biology, 385-399, 2009
312009
Bi-level clustering of mixed categorical and numerical biomedical data
B Andreopoulos, A An, X Wang
International Journal of Data Mining and Bioinformatics 1 (1), 19-56, 2006
302006
Multiple layer clustering of large software systems
B Andreopoulos, A An, V Tzerpos, X Wang
12th Working Conference on Reverse Engineering (WCRE'05), 10 pp.-88, 2005
292005
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits
S Miyauchi, E Kiss, A Kuo, E Drula, A Kohler, M Sánchez-García, E Morin, ...
Nature communications 11 (1), 1-17, 2020
272020
Integrated analysis reveals hsa-miR-142 as a representative of a lymphocyte-specific gene expression and methylation signature
B Andreopoulos, D Anastassiou
Cancer informatics 11, CIN. S9037, 2012
232012
Comprehensive genomic and transcriptomic analysis of polycyclic aromatic hydrocarbon degradation by a mycoremediation fungus, Dentipellis sp. KUC8613
H Park, B Min, Y Jang, J Kim, A Lipzen, A Sharma, B Andreopoulos, ...
Applied microbiology and biotechnology 103 (19), 8145-8155, 2019
142019
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