| Data classification CC Aggarwal Data Mining, 285-344, 2015 | 1943 | 2015 |
| A roadmap of clustering algorithms: finding a match for a biomedical application B Andreopoulos, A An, X Wang, M Schroeder Briefings in bioinformatics 10 (3), 297-314, 2009 | 245 | 2009 |
| Unraveling protein networks with power graph analysis L Royer, M Reimann, B Andreopoulos, M Schroeder PLoS Comput Biol 4 (7), e1000108, 2008 | 159 | 2008 |
| Widespread adenine N6-methylation of active genes in fungi SJ Mondo, RO Dannebaum, RC Kuo, KB Louie, AJ Bewick, K LaButti, ... Nature genetics 49 (6), 964-968, 2017 | 149 | 2017 |
| Megaphylogeny resolves global patterns of mushroom evolution T Varga, K Krizsán, C Földi, B Dima, M Sánchez-García, ... Nature ecology & evolution 3 (4), 668-678, 2019 | 56 | 2019 |
| Next generation sequencing data of a defined microbial mock community E Singer, B Andreopoulos, RM Bowers, J Lee, S Deshpande, J Chiniquy, ... Scientific data 3 (1), 1-8, 2016 | 50 | 2016 |
| Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy D Alexopoulou, B Andreopoulos, H Dietze, A Doms, F Gandon, ... BMC bioinformatics 10 (1), 1-15, 2009 | 45 | 2009 |
| Leveraging single-cell genomics to expand the fungal tree of life SR Ahrendt, CA Quandt, D Ciobanu, A Clum, A Salamov, B Andreopoulos, ... Nature microbiology 3 (12), 1417-1428, 2018 | 42 | 2018 |
| Clustering large software systems at multiple layers B Andreopoulos, A An, V Tzerpos, X Wang Information and Software Technology 49 (3), 244-254, 2007 | 39 | 2007 |
| Clustering by common friends finds locally significant proteins mediating modules B Andreopoulos, A An, X Wang, M Faloutsos, M Schroeder Bioinformatics 23 (9), 1124-1131, 2007 | 37 | 2007 |
| Hierarchical density-based clustering of categorical data and a simplification B Andreopoulos, A An, X Wang Pacific-Asia Conference on Knowledge Discovery and Data Mining, 11-22, 2007 | 33 | 2007 |
| Word sense disambiguation in biomedical ontologies with term co-occurrence analysis and document clustering B Andreopoulos, D Alexopoulou, M Schroeder International journal of data mining and bioinformatics 2 (3), 193-215, 2008 | 32 | 2008 |
| Gopubmed: Exploring pubmed with ontological background knowledge H Dietze, D Alexopoulou, MR Alvers, L Barrio-Alvers, B Andreopoulos, ... Bioinformatics for Systems Biology, 385-399, 2009 | 31 | 2009 |
| Bi-level clustering of mixed categorical and numerical biomedical data B Andreopoulos, A An, X Wang International Journal of Data Mining and Bioinformatics 1 (1), 19-56, 2006 | 29 | 2006 |
| Multiple layer clustering of large software systems B Andreopoulos, A An, V Tzerpos, X Wang 12th Working Conference on Reverse Engineering (WCRE'05), 10 pp.-88, 2005 | 26 | 2005 |
| 101 Dothideomycetes genomes: a test case for predicting lifestyles and emergence of pathogens S Haridas, R Albert, M Binder, J Bloem, K LaButti, A Salamov, ... Studies in mycology 96, 141-153, 2020 | 25 | 2020 |
| Integrated analysis reveals hsa-miR-142 as a representative of a lymphocyte-specific gene expression and methylation signature B Andreopoulos, D Anastassiou Cancer informatics 11, CIN. S9037, 2012 | 23 | 2012 |
| Phage-specific metabolic reprogramming of virocells C Howard-Varona, MM Lindback, GE Bastien, N Solonenko, AA Zayed, ... The ISME journal 14 (4), 881-895, 2020 | 20 | 2020 |
| Satisficing the Conflicting Software Qualities of Maintainability and Performance at the Source Code Level. B Andreopoulos WER, 176-188, 2004 | 12 | 2004 |
| Efficient layered density-based clustering of categorical data B Andreopoulos, A An, X Wang, D Labudde Journal of biomedical informatics 42 (2), 365-376, 2009 | 11 | 2009 |
