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Torben Nielsen
Torben Nielsen
Jorgmundir
Bestätigte E-Mail-Adresse bei jorgmundir.life
Titel
Zitiert von
Zitiert von
Jahr
A genomic catalog of Earth’s microbiomes
S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ...
Nature biotechnology 39 (4), 499-509, 2021
5652021
IMG/M: integrated genome and metagenome comparative data analysis system
IMA Chen, VM Markowitz, K Chu, K Palaniappan, E Szeto, M Pillay, ...
Nucleic acids research, gkw929, 2016
4742016
The microflora of rainbow trout intestine: a comparison of traditional and molecular identification
B Spanggaard, I Huber, J Nielsen, T Nielsen, KF Appel, L Gram
Aquaculture 182 (1-2), 1-15, 2000
4382000
The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v. 4)
M Huntemann, NN Ivanova, K Mavromatis, HJ Tripp, D Paez-Espino, ...
Standards in genomic sciences 10, 1-6, 2015
4072015
Phylogenetic analysis and in situ identification of the intestinal microbial community of rainbow trout (Oncorhynchus mykiss, Walbaum)
I Huber, B Spanggaard, KF Appel, L Rossen, T Nielsen, L Gram
Journal of applied microbiology 96 (1), 117-132, 2004
3572004
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses
D Paez-Espino, IMA Chen, K Palaniappan, A Ratner, K Chu, E Szeto, ...
Nucleic acids research 45 (D1), gkw1030, 2016
2112016
Environmental drivers of a microbial genomic transition zone in the ocean’s interior
DR Mende, JA Bryant, FO Aylward, JM Eppley, T Nielsen, DM Karl, ...
Nature Microbiology 2 (10), 1367-1373, 2017
1502017
Towards a balanced view of the bacterial tree of life
F Schulz, EA Eloe-Fadrosh, RM Bowers, J Jarett, T Nielsen, NN Ivanova, ...
Microbiome 5, 1-6, 2017
962017
Sulfur metabolites that facilitate oceanic phytoplankton–bacteria carbon flux
M Landa, AS Burns, BP Durham, K Esson, B Nowinski, S Sharma, ...
The ISME journal 13 (10), 2536-2550, 2019
782019
Selective carbon sources influence the end products of microbial nitrate respiration
HK Carlson, LM Lui, MN Price, AE Kazakov, AV Carr, JV Kuehl, TK Owens, ...
The ISME journal 14 (8), 2034-2045, 2020
702020
Proliferation and location of Vibrio anguillarum during infection of rainbow trout, Oncorhynchus mykiss (Walbaum).
B Spanggaard, I Huber, J Nielsen, T Nielsen, L Gram
Journal of fish diseases 23 (6), 2000
652000
The standard operating procedure of the DOEJGI microbial genome annotation pipeline (MGAP v. 4). Stand Genomic Sci 10: 86
M Huntemann, NN Ivanova, K Mavromatis, HJ Tripp, D Paez-Espino, ...
592015
Metagenomic insights into diazotrophic communities across Arctic glacier forefields
MV Nash, AM Anesio, G Barker, M Tranter, G Varliero, EA Eloe-Fadrosh, ...
FEMS microbiology ecology 94 (9), fiy114, 2018
422018
Systematic discovery of pseudomonad genetic factors involved in sensitivity to tailocins
S Carim, AL Azadeh, AE Kazakov, MN Price, PJ Walian, LM Lui, ...
The ISME journal 15 (8), 2289-2305, 2021
372021
The genetic basis of phage susceptibility, cross-resistance and host-range in Salmonella
BA Adler, AE Kazakov, C Zhong, H Liu, E Kutter, LM Lui, TN Nielsen, ...
Microbiology 167 (12), 001126, 2021
322021
A method for achieving complete microbial genomes and improving bins from metagenomics data
LM Lui, TN Nielsen, AP Arkin
PLoS computational biology 17 (5), e1008972, 2021
312021
Quantitative trait loci (QTL) associated with resistance of rainbow trout Oncorhynchus mykiss against the parasitic ciliate Ichthyophthirius multifiliis
R Jaafar, J Ødegård, H Mathiessen, AM Karami, MH Marana, ...
Journal of fish diseases 43 (12), 1591-1602, 2020
292020
Immune gene expression and genome-wide association analysis in rainbow trout with different resistance to Yersinia ruckeri infection
S Zuo, AM Karami, J Ødegård, H Mathiessen, MH Marana, RM Jaafar, ...
Fish & Shellfish Immunology 106, 441-450, 2020
292020
Improved environmental genomes via integration of metagenomic and single-cell assemblies
DR Mende, FO Aylward, JM Eppley, TN Nielsen, EF DeLong
Frontiers in microbiology 7, 143, 2016
292016
A major QTL for resistance to Vibrio anguillarum in rainbow trout
AM Karami, J Ødegård, MH Marana, S Zuo, R Jaafar, H Mathiessen, ...
Frontiers in Genetics 11, 607558, 2020
232020
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