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Raquel Cardoso de Melo-Minardi
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A human gut microbial gene catalogue established by metagenomic sequencing
J Qin, R Li, J Raes, M Arumugam, KS Burgdorf, C Manichanh, T Nielsen, ...
nature 464 (7285), 59-65, 2010
136742010
Enterotypes of the human gut microbiome
M Arumugam, J Raes, E Pelletier, D Le Paslier, T Yamada, DR Mende, ...
Nature 473 (7346), 174-180, 2011
86282011
Revealing the hidden functional diversity of an enzyme family
K Bastard, AAT Smith, C Vergne-Vaxelaire, A Perret, A Zaparucha, ...
Nature chemical biology 10 (1), 42-49, 2014
1352014
Protein cutoff scanning: A comparative analysis of cutoff dependent and cutoff free methods for prospecting contacts in proteins
CH da Silveira, DEV Pires, RC Minardi, C Ribeiro, CJM Veloso, ...
Proteins: Structure, Function, and Bioinformatics 74 (3), 727-743, 2009
1092009
Cutoff Scanning Matrix (CSM): structural classification and function prediction by protein inter-residue distance patterns
DEV Pires, RC de Melo-Minardi, MA dos Santos, CH da Silveira, ...
BMC genomics 12, 1-11, 2011
912011
aCSM: noise-free graph-based signatures to large-scale receptor-based ligand prediction
DEV Pires, RC de Melo-Minardi, CH da Silveira, FF Campos, W Meira Jr
Bioinformatics 29 (7), 855-861, 2013
672013
A guide to performing systematic literature reviews in bioinformatics
DCB Mariano, C Leite, LHS Santos, REO Rocha, RC de Melo-Minardi
arXiv preprint arXiv:1707.05813, 2017
572017
Familial STAG2 germline mutation defines a new human cohesinopathy
FC Soardi, A Machado-Silva, ND Linhares, G Zheng, Q Qu, HB Pena, ...
NPJ genomic medicine 2 (1), 7, 2017
57*2017
Identification of subfamily-specific sites based on active sites modeling and clustering
RC de Melo-Minardi, K Bastard, F Artiguenave
Bioinformatics 26 (24), 3075-3082, 2010
512010
nAPOLI: a graph-based strategy to detect and visualize conserved protein-ligand interactions in large-scale
AV Fassio, LH Santos, SA Silveira, RS Ferreira, RC de Melo-Minardi
IEEE/ACM transactions on computational biology and bioinformatics 17 (4 …, 2019
432019
GASS: identifying enzyme active sites with genetic algorithms
SC Izidoro, RC de Melo-Minardi, GL Pappa
Bioinformatics 31 (6), 864-870, 2015
412015
Propedia: a database for protein–peptide identification based on a hybrid clustering algorithm
PM Martins, LH Santos, D Mariano, FC Queiroz, LL Bastos, IS Gomes, ...
BMC bioinformatics 22, 1-20, 2021
382021
Characterization of glucose-tolerant β-glucosidases used in biofuel production under the bioinformatics perspective: A systematic review
DCB Mariano, C Leite, LHS Santos, LF Marins, KS Machado, AV Werhli, ...
Genet Mol Res 16 (3), 10.4238, 2017
342017
The Star STING server: a multiplatform environment for protein structure analysis.
G Neshich, I Mazoni, SRM Oliveira, MEB Yamagishi, PR Kuser-Falcao, ...
Genetics and Molecular Research, v. 5, n. 4, p. 717-722, 2006., 2006
332006
Finding protein-protein interaction patterns by contact map matching.
RC Melo, C Ribeiro, CS Murray, CJM Veloso, CH da Silveira, G Neshich, ...
Genetics and Molecular Research, v. 6, n. 4, p. 946-963, 2007., 2007
312007
Protein structural bioinformatics: An overview
V de Almeida Paiva, I de Souza Gomes, CR Monteiro, MV Mendonça, ...
Computers in Biology and Medicine 147, 105695, 2022
302022
Molecular dynamics gives new insights into the glucose tolerance and inhibition mechanisms on β-glucosidases
LSC Costa, DCB Mariano, REO Rocha, J Kraml, CH Silveira, KR Liedl, ...
Molecules 24 (18), 3215, 2019
302019
Introducing programming skills for life science students
D Mariano, P Martins, L Helene Santos, RC de Melo‐Minardi
Biochemistry and Molecular Biology Education 47 (3), 288-295, 2019
272019
Prioritizing virtual screening with interpretable interaction fingerprints
AV Fassio, L Shub, L Ponzoni, J McKinley, MJ O’Meara, RS Ferreira, ...
Journal of Chemical Information and Modeling 62 (18), 4300-4318, 2022
262022
Enterotypes of the human gut microbiome
GR Fernandes, J Tap, T Bruls, JM Batto, M Bertalan, N Borruel, F Casellas, ...
Nature 473 (7346), 174180, 2011
252011
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