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Matthew Holden
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Roary: rapid large-scale prokaryote pan genome analysis
AJ Page, CA Cummins, M Hunt, VK Wong, S Reuter, MTG Holden, ...
Bioinformatics 31 (22), 3691-3693, 2015
30972015
Genome sequence of Yersinia pestis, the causative agent of plague
J Parkhill, BW Wren, NR Thomson, RW Titball, MTG Holden, MB Prentice, ...
Nature 413 (6855), 523-527, 2001
14922001
Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18
J Parkhill, G Dougan, KD James, NR Thomson, D Pickard, J Wain, ...
Nature 413 (6858), 848-852, 2001
14452001
Evolution of MRSA during hospital transmission and intercontinental spread
SR Harris, EJ Feil, MTG Holden, MA Quail, EK Nickerson, N Chantratita, ...
Science 327 (5964), 469-474, 2010
12092010
Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance
MTG Holden, EJ Feil, JA Lindsay, SJ Peacock, NPJ Day, MC Enright, ...
Proceedings of the National Academy of Sciences 101 (26), 9786-9791, 2004
11492004
Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica
J Parkhill, M Sebaihia, A Preston, LD Murphy, N Thomson, DE Harris, ...
Nature genetics 35 (1), 32-40, 2003
11202003
Meticillin-resistant Staphylococcus aureus with a novel mecA homologue in human and bovine populations in the UK and Denmark: a descriptive study
L García-Álvarez, MTG Holden, H Lindsay, CR Webb, DFJ Brown, ...
The Lancet infectious diseases 11 (8), 595-603, 2011
10642011
The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome
M Sebaihia, BW Wren, P Mullany, NF Fairweather, N Minton, R Stabler, ...
Nature genetics 38 (7), 779-786, 2006
9462006
Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei
MTG Holden, RW Titball, SJ Peacock, AM Cerdeño-Tárraga, T Atkins, ...
Proceedings of the National Academy of Sciences 101 (39), 14240-14245, 2004
8602004
Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak
CU Köser, MTG Holden, MJ Ellington, EJP Cartwright, NM Brown, ...
New England Journal of Medicine 366 (24), 2267-2275, 2012
7392012
Quorum‐sensing cross talk: isolation and chemical characterization of cyclic dipeptides from Pseudomonas aeruginosa and other Gram‐negative bacteria
MTG Holden, S Ram Chhabra, R De Nys, P Stead, NJ Bainton, PJ Hill, ...
Molecular microbiology 33 (6), 1254-1266, 1999
6861999
Staphylococcus aureus: superbug, super genome?
JA Lindsay, MTG Holden
Trends in microbiology 12 (8), 378-385, 2004
6312004
Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study
SR Harris, EJP Cartwright, ME Török, MTG Holden, NM Brown, ...
The Lancet infectious diseases, 2012
6172012
Routine use of microbial whole genome sequencing in diagnostic and public health microbiology
CU Köser, MJ Ellington, EJP Cartwright, SH Gillespie, NM Brown, ...
Public Library of Science 8 (8), e1002824, 2012
5912012
Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors
KS Bell, M Sebaihia, L Pritchard, MTG Holden, LJ Hyman, MC Holeva, ...
Proceedings of the National Academy of Sciences 101 (30), 11105-11110, 2004
4732004
A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic
MTG Holden, LY Hsu, K Kurt, LA Weinert, AE Mather, SR Harris, ...
Genome research 23 (4), 653-664, 2013
4622013
Microreact: visualizing and sharing data for genomic epidemiology and phylogeography
S Argimón, K Abudahab, RJE Goater, A Fedosejev, J Bhai, C Glasner, ...
Microbial genomics 2 (11), e000093, 2016
4592016
Comparisons of dN/dS are time dependent for closely related bacterial genomes
EPC Rocha, JM Smith, LD Hurst, MTG Holden, JE Cooper, NH Smith, ...
Journal of Theoretical Biology 239 (2), 226-235, 2006
4392006
LuxS: its role in central metabolism and the in vitro synthesis of 4-hydroxy-5-methyl-3(2H)-furanone
K Winzer, KR Hardie, N Burgess, N Doherty, D Kirke, MTG Holden, ...
Microbiology 148 (4), 909-922, 2002
4322002
The role of whole genome sequencing in antimicrobial susceptibility testing of bacteria: report from the EUCAST Subcommittee
MJ Ellington, O Ekelund, FM Aarestrup, R Canton, M Doumith, C Giske, ...
Clinical microbiology and infection 23 (1), 2-22, 2017
4122017
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