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Pieter C Dorrestein
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
52552019
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
M Wang, JJ Carver, VV Phelan, LM Sanchez, N Garg, Y Peng, ...
Nature biotechnology 34 (8), 828-837, 2016
18672016
Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature
PG Arnison, MJ Bibb, G Bierbaum, AA Bowers, TS Bugni, G Bulaj, ...
Natural product reports 30 (1), 108-160, 2013
15832013
Best practices for analysing microbiomes
R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ...
Nature Reviews Microbiology 16 (7), 410-422, 2018
8802018
Mass spectral molecular networking of living microbial colonies
J Watrous, P Roach, T Alexandrov, BS Heath, JY Yang, RD Kersten, ...
Proceedings of the National Academy of Sciences 109 (26), E1743-E1752, 2012
7402012
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
7222018
Antimicrobials from human skin commensal bacteria protect against Staphylococcus aureus and are deficient in atopic dermatitis
T Nakatsuji, TH Chen, S Narala, KA Chun, AM Two, T Yun, F Shafiq, ...
Science translational medicine 9 (378), eaah4680, 2017
6592017
ncRNA-and Pc2 methylation-dependent gene relocation between nuclear structures mediates gene activation programs
L Yang, C Lin, W Liu, J Zhang, KA Ohgi, JD Grinstein, PC Dorrestein, ...
Cell 147 (4), 773-788, 2011
6362011
Minimum information about a biosynthetic gene cluster
MH Medema, R Kottmann, P Yilmaz, M Cummings, JB Biggins, K Blin, ...
Nature chemical biology 11 (9), 625-631, 2015
6272015
Microbiome-wide association studies link dynamic microbial consortia to disease
JA Gilbert, RA Quinn, J Debelius, ZZ Xu, J Morton, N Garg, JK Jansson, ...
Nature 535 (7610), 94-103, 2016
5502016
Molecular networking as a dereplication strategy
JY Yang, LM Sanchez, CM Rath, X Liu, PD Boudreau, N Bruns, E Glukhov, ...
Journal of natural products 76 (9), 1686-1699, 2013
4952013
Specialized metabolites from the microbiome in health and disease
G Sharon, N Garg, J Debelius, R Knight, PC Dorrestein, SK Mazmanian
Cell metabolism 20 (5), 719-730, 2014
4292014
Direct cloning and refactoring of a silent lipopeptide biosynthetic gene cluster yields the antibiotic taromycin A
K Yamanaka, KA Reynolds, RD Kersten, KS Ryan, DJ Gonzalez, V Nizet, ...
Proceedings of the National Academy of Sciences 111 (5), 1957-1962, 2014
4022014
A monovalent streptavidin with a single femtomolar biotin binding site
M Howarth, DJF Chinnapen, K Gerrow, PC Dorrestein, MR Grandy, ...
Nature methods 3 (4), 267-273, 2006
3952006
PHF8 mediates histone H4 lysine 20 demethylation events involved in cell cycle progression
W Liu, B Tanasa, OV Tyurina, TY Zhou, R Gassmann, WT Liu, KA Ohgi, ...
Nature 466 (7305), 508-512, 2010
3892010
American gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Msystems 3 (3), e00031-18, 2018
3792018
SIRIUS 4: a rapid tool for turning tandem mass spectra into metabolite structure information
K Dührkop, M Fleischauer, M Ludwig, AA Aksenov, AV Melnik, M Meusel, ...
Nature methods 16 (4), 299-302, 2019
3742019
A mass spectrometry–guided genome mining approach for natural product peptidogenomics
RD Kersten, YL Yang, Y Xu, P Cimermancic, SJ Nam, W Fenical, ...
Nature chemical biology 7 (11), 794-802, 2011
3572011
Molecular cartography of the human skin surface in 3D
A Bouslimani, C Porto, CM Rath, M Wang, Y Guo, A Gonzalez, ...
Proceedings of the National Academy of Sciences 112 (17), E2120-E2129, 2015
3272015
Design of layered crystalline materials using coordination chemistry and hydrogen bonds
JC MacDonald, PC Dorrestein, MM Pilley, MM Foote, JL Lundburg, ...
Journal of the American Chemical Society 122 (47), 11692-11702, 2000
3212000
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