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Aurelie PIRAYRE
Aurelie PIRAYRE
PhD Student, IFP Energies nouvelles
Bestätigte E-Mail-Adresse bei esiee.fr - Startseite
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BRANE Clust: Cluster-assisted gene regulatory network inference refinement
A Pirayre, C Couprie, L Duval, JC Pesquet
IEEE/ACM transactions on computational biology and bioinformatics 15 (3 …, 2017
272017
BRANE Cut: biologically-related a priori network enhancement with graph cuts for gene regulatory network inference
A Pirayre, C Couprie, F Bidard, L Duval, JC Pesquet
BMC bioinformatics 16 (1), 369, 2015
212015
Kinetic transcriptome analysis reveals an essentially intact induction system in a cellulase hyper-producer Trichoderma reesei strain
D Poggi-Parodi, F Bidard, A Pirayre, T Portnoy, C Blugeon, B Seiboth, ...
Biotechnology for biofuels 7 (1), 1-16, 2014
182014
Fast convex optimization for connectivity enforcement in gene regulatory network inference
A Pirayre, C Couprie, L Duval, JC Pesquet
2015 IEEE International Conference on Acoustics, Speech and Signal …, 2015
102015
HOGMep: Variational Bayes and higher-order graphical models applied to joint image recovery and segmentation
A Pirayre, Y Zheng, L Duval, JC Pesquet
2017 IEEE International Conference on Image Processing (ICIP), 3775-3779, 2017
92017
Glucose-lactose mixture feeds in industry-like conditions: a gene regulatory network analysis on the hyperproducing Trichoderma reesei strain Rut-C30
A Pirayre, L Duval, C Blugeon, C Firmo, S Perrin, E Jourdier, A Margeot, ...
BMC genomics 21 (1), 1-17, 2020
82020
Driving Behavior Identification and Real-World Fuel Consumption Estimation With Crowdsensing Data
A Pirayre, P Michel, SS Rodriguez, A Chasse
IEEE Transactions on Intelligent Transportation Systems 23 (10), 18378-18391, 2022
72022
BRANEnet: embedding multilayer networks for omics data integration
S Jagtap, A Pirayre, F Bidard, L Duval, FD Malliaros
BMC bioinformatics 23 (1), 1-17, 2022
52022
From trips database to real-world fuel consumption. model and large-scale simulation framework
P Michel, A Pirayre, SS Rodríguez, A Chasse
2020 IEEE 23rd International Conference on Intelligent Transportation …, 2020
52020
Graph inference enhancement with clustering: Application to gene regulatory network reconstruction
A Pirayre, C Couprie, L Duval, JC Pesquet
2015 23rd European Signal Processing Conference (EUSIPCO), 2406-2410, 2015
52015
Multiomics Data Integration for Gene Regulatory Network Inference with Exponential Family Embeddings
S Jagtap, A Çelikkanat, A Pirayre, F Bidard, L Duval, F Malliaros
29th European Signal Processing Conference (EUSIPCO), 2021
42021
A review on graph optimization and algorithmic frameworks
A Benfenati, E Chouzenoux, L Duval, JC Pesquet, A Pirayre
LIGM-Laboratoire d'Informatique Gaspard-Monge, 2018
42018
BraneMF: integration of biological networks for functional analysis of proteins
S Jagtap, A Çelikkanat, A Pirayre, F Bidard, L Duval, FD Malliaros
Bioinformatics 38 (24), 5383-5389, 2022
32022
Genome-Wide TSS Distribution in Three Related Clostridia with Normalized Capp-Switch Sequencing
R Hocq, S Jagtap, M Boutard, AC Tolonen, L Duval, A Pirayre, ...
Microbiology Spectrum 10 (2), e02288-21, 2022
22022
BRANet: Graph-based Integration of Multi-omics Data with Biological a priori for Regulatory Network Inference
S Jagtap, A Pirayre, F Bidard, L Duval, F Malliaros
17th International Conference on Computational Intelligence Methods for …, 2021
22021
Suppression de ligne de base et débruitage de chromatogrammes par pénalisation asymétrique de positivité et dérivées parcimonieuses
L Duval, A Pirayre, X Ning, I Selesnick
GRETSI: Colloque francophone de traitement du signal et des images, 2015
12015
Gene regulatory network analysis of Trichoderma reesei grown on glucose-lactose mixtures suggests links between development and cellulase production
A Pirayre, L Duval, C Blugeon, C Firmo, S Perrin, E Jourdier, A Margeot, ...
2020
Pics, ligne de base, bruit: séparation ternaire de sources assistée (BEADS: positivité, parcimonie), spectres chimiques & miscellanées
L DUVAL, A PIRAYRE, X NING, IW SELESNICK
2018
Retour sur... la ligne de base BEADS: correction et filtrage conjoints de mesures analytiques exploitant positivité et parcimonie
X NING, IW SELESNICK, L DUVAL, A PIRAYRE
2017
Reconstruction and clustering with graph optimization and priors on gene networks and images
A Pirayre
Université Paris Est-Marne-la-Vallée, 2017
2017
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