Folgen
Tyler C. Shimko
Tyler C. Shimko
Graduate Student, Stanford University
Bestätigte E-Mail-Adresse bei stanford.edu - Startseite
Titel
Zitiert von
Zitiert von
Jahr
Genetic effects on gene expression across human tissues
GTEx Consortium Lead analysts: Aguet François 1 Brown Andrew A. 2 3 4 Castel ...
Nature 550 (7675), 204-213, 2017
26082017
A Powerful New Quantitative Genetics Platform, Combining Caenorhabditis elegans High-Throughput Fitness Assays with a Large Collection of Recombinant Strains
EC Andersen, TC Shimko, JR Crissman, R Ghosh, JS Bloom, HS Seidel, ...
G3: Genes, Genomes, Genetics 5 (5), 911-920, 2015
992015
Discovering epistatic feature interactions from neural network models of regulatory DNA sequences
P Greenside, T Shimko, P Fordyce, A Kundaje
Bioinformatics 34 (17), i629-i637, 2018
622018
Comprehensive, high-resolution binding energy landscapes reveal context dependencies of transcription factor binding
DD Le, TC Shimko, AK Aditham, AM Keys, SA Longwell, Y Orenstein, ...
Proceedings of the National Academy of Sciences 115 (16), E3702-E3711, 2018
562018
COPASutils: an R package for reading, processing, and visualizing data from COPAS large-particle flow cytometers
TC Shimko, EC Andersen
PloS one 9 (10), e111090, 2014
462014
An open-source, programmable pneumatic setup for operation and automated control of single-and multi-layer microfluidic devices
K Brower, RR Puccinelli, CJ Markin, TC Shimko, SA Longwell, B Cruz, ...
HardwareX 3, 117-134, 2018
342018
Local genetic effects on gene expression across 44 human tissues. bioRxiv. 2016
F Aguet, AA Brown, S Castel, JR Davis, P Mohammadi, AV Segre, ...
January 1, 074450, 0
9
A powerful new quantitative genetics platform, combining Caenorhabditis elegans high-throughput fitness assays with a large collection of recombinant strains. G3 (Bethesda) 5 …
EC Andersen, TC Shimko, JR Crissman, R Ghosh, JS Bloom, HS Seidel, ...
72015
DeCoDe: degenerate codon design for complete protein-coding DNA libraries
TC Shimko, PM Fordyce, Y Orenstein
Bioinformatics 36 (11), 3357-3364, 2020
62020
A multi-modal neural network for learning cis and trans regulation of stress response in yeast
B Liu, N Hussami, A Shrikumar, T Shimko, S Bhate, S Longwell, ...
arXiv preprint arXiv:1908.09426, 2019
52019
Comprehensive, high-resolution binding energy landscapes reveal context dependencies of transcription factor binding
DD Le, TC Shimko, AK Aditham, AM Keys, Y Orenstein, PM Fordyce
BioRxiv, 193904, 2017
32017
BET-seq: Binding energy topographies revealed by microfluidics and high-throughput sequencing
AK Aditham, TC Shimko, PM Fordyce
Methods in cell biology 148, 229-250, 2018
22018
Local genetic effects on gene expression across 44 human tissues. bioRxiv
F Aguet, AA Brown, S Castel, JR Davis, P Mohammadi, AV Segre, ...
Cold Spring Harbor Labs Journals 10, 074450, 2016
22016
Method for multiplexed detection of nucleic acids using spectrally encoded beads
AK White, HQ Nguyen, FB Yu, T Shimko, PM Fordyce, N Andini, S Yang, ...
US Patent App. 17/613,676, 2022
2022
High-Throughput Biophysical Assays and Models to Link Molecular Sequence Variation to Structural and Functional Consequences
TC Shimko
Stanford University, 2020
2020
Deep Learning Models Explore the Structural Effects of Transcription Factor-DNA Complexes on Binding Specificity
TC Shimko, PM Fordyce
Biophysical Journal 116 (3), 503a, 2019
2019
Mapping Suppressors of Premature Sperm Activation in C. Elegans
T Shimko
Department of Biology, University of Utah, 2015
2015
Res2Vec: Amino acid vector embeddings from 3d-protein structure
S Longwell, T Shimko
THRESHOLD 30 (22,344), 22,344, 0
Das System kann den Vorgang jetzt nicht ausführen. Versuchen Sie es später erneut.
Artikel 1–18