Pavlos Pavlidis
Pavlos Pavlidis
Foundation of Research and Technology - Hellas (ICS)
Verified email at ics.forth.gr - Homepage
Title
Cited by
Cited by
Year
A general species delimitation method with applications to phylogenetic placements
J Zhang, P Kapli, P Pavlidis, A Stamatakis
Bioinformatics 29 (22), 2869-2876, 2013
15342013
Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo
P Kapli, S Lutteropp, J Zhang, K Kobert, P Pavlidis, A Stamatakis, T Flouri
Bioinformatics 33 (11), 1630-1638, 2017
3742017
SweeD: likelihood-based detection of selective sweeps in thousands of genomes
P Pavlidis, D Živković, A Stamatakis, N Alachiotis
Molecular biology and evolution 30 (9), 2224-2234, 2013
2642013
A critical assessment of storytelling: gene ontology categories and the importance of validating genomic scans
P Pavlidis, JD Jensen, W Stephan, A Stamatakis
Molecular biology and evolution 29 (10), 3237-3248, 2012
2022012
Searching for footprints of positive selection in whole-genome SNP data from nonequilibrium populations
P Pavlidis, JD Jensen, W Stephan
Genetics 185 (3), 907-922, 2010
1472010
1000 Genomes Selection Browser 1.0: a genome browser dedicated to signatures of natural selection in modern humans
M Pybus, GM Dall’Olio, P Luisi, M Uzkudun, A Carreno-Torres, P Pavlidis, ...
Nucleic acids research 42 (D1), D903-D909, 2014
1412014
Evolution of self-compatibility in Arabidopsis by a mutation in the male specificity gene
T Tsuchimatsu, K Suwabe, R Shimizu-Inatsugi, S Isokawa, P Pavlidis, ...
Nature 464 (7293), 1342-1346, 2010
1382010
OmegaPlus: a scalable tool for rapid detection of selective sweeps in whole-genome datasets
N Alachiotis, A Stamatakis, P Pavlidis
Bioinformatics 28 (17), 2274-2275, 2012
952012
msABC: a modification of Hudson’s ms to facilitate multi‐locus ABC analysis
P Pavlidis, S Laurent, W Stephan
Molecular Ecology Resources 10 (4), 723-727, 2010
762010
A survey of methods and tools to detect recent and strong positive selection
P Pavlidis, N Alachiotis
Journal of Biological Research-Thessaloniki 24 (1), 1-17, 2017
752017
Primate genome architecture influences structural variation mechanisms and functional consequences
O Gokcumen, V Tischler, J Tica, Q Zhu, RC Iskow, E Lee, MHY Fritz, ...
Proceedings of the National Academy of Sciences 110 (39), 15764-15769, 2013
602013
A population genomic approach to map recent positive selection in model species
P Pavlidis, S Hutter, W Stephan
Molecular Ecology 17 (16), 3585-3598, 2008
582008
Inference of seed bank parameters in two wild tomato species using ecological and genetic data
A Tellier, SJY Laurent, H Lainer, P Pavlidis, W Stephan
Proceedings of the National Academy of Sciences 108 (41), 17052-17057, 2011
562011
Archaic Hominin Introgression in Africa Contributes to Functional Salivary MUC7 Genetic Variation
D Xu, P Pavlidis, RO Taskent, N Alachiotis, C Flanagan, M DeGiorgio, ...
Molecular Biology and Evolution 34 (10), 2704-2715, 2017
532017
Selective sweeps in multilocus models of quantitative traits
P Pavlidis, D Metzler, W Stephan
Genetics 192 (1), 225-239, 2012
532012
Phylogenetic analysis of SARS-CoV-2 data is difficult
B Morel, P Barbera, L Czech, B Bettisworth, L Hübner, S Lutteropp, ...
Molecular biology and evolution 38 (5), 1777-1791, 2021
442021
RAiSD detects positive selection based on multiple signatures of a selective sweep and SNP vectors
N Alachiotis, P Pavlidis
Communications biology 1 (1), 1-11, 2018
432018
The evolution and functional impact of human deletion variants shared with archaic hominin genomes
YL Lin, P Pavlidis, E Karakoc, J Ajay, O Gokcumen
Molecular biology and evolution 32 (4), 1008-1019, 2015
432015
Independent amylase gene copy number bursts correlate with dietary preferences in mammals
P Pajic, P Pavlidis, K Dean, L Neznanova, RA Romano, D Garneau, ...
Elife 8, e44628, 2019
382019
The turbulent life of Sirevirus retrotransposons and the evolution of the maize genome: more than ten thousand elements tell the story
A Bousios, YAI Kourmpetis, P Pavlidis, E Minga, A Tsaftaris, N Darzentas
The Plant Journal 69 (3), 475-488, 2012
322012
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Articles 1–20