| Mapping nucleosome positions using DNase-seq J Zhong, K Luo, PS Winter, GE Crawford, ES Iversen, AJ Hartemink Genome research 26 (3), 351-364, 2016 | 59 | 2016 |
| Personalized query suggestions J Zhong, W Guo, H Gao, B Long Proceedings of the 43rd International ACM SIGIR Conference on Research and …, 2020 | 18 | 2020 |
| Learning protein–DNA interaction landscapes by integrating experimental data through computational models J Zhong, T Wasson, AJ Hartemink Bioinformatics 30 (20), 2868-2874, 2014 | 14 | 2014 |
| RoboCOP: jointly computing chromatin occupancy profiles for numerous factors from chromatin accessibility data S Mitra, J Zhong, TQ Tran, DM MacAlpine, AJ Hartemink Nucleic Acids Research 49 (14), 7925-7938, 2021 | 4 | 2021 |
| Learning a hybrid architecture for sequence regression and annotation Y Zhang, R Henao, L Carin, J Zhong, A Hartemink Proceedings of the AAAI Conference on Artificial Intelligence 30 (1), 2016 | 4 | 2016 |
| Profiling the quantitative occupancy of myriad transcription factors across conditions by modeling chromatin accessibility data K Luo, J Zhong, A Safi, LK Hong, AK Tewari, L Song, TE Reddy, L Ma, ... Genome Research 32 (6), 1183-1198, 2022 | 1 | 2022 |
| Quantitative occupancy of myriad transcription factors from one DNase experiment enables efficient comparisons across conditions K Luo, J Zhong, A Safi, LK Hong, AK Tewari, L Song, TE Reddy, L Ma, ... BioRxiv, 2020.06. 28.171587, 2020 | 1 | 2020 |
| Chromatin interactions correlate with local transcriptional activity in Saccharomyces cerevisiae Z Scholl, J Zhong, AJ Hartemink bioRxiv, 021725, 2015 | 1 | 2015 |
| Computational inference of genome-wide protein-DNA interactions using high-throughput genomic data J Zhong Duke University, 2015 | 1 | 2015 |
| RoboCOP: Multivariate State Space Model Integrating Epigenomic Accessibility Data to Elucidate Genome-Wide Chromatin Occupancy S Mitra, J Zhong, DM MacAlpine, AJ Hartemink Research in Computational Molecular Biology: 24th Annual International …, 2020 | | 2020 |
| A Bayesian Model for Nucleosome Positioning Using DNase-seq Data J Zhong Duke University, 2015 | | 2015 |
