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Steffen Heyne
Steffen Heyne
Verified email at roche.com
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deepTools2: a next generation web server for deep-sequencing data analysis
F Ramírez, DP Ryan, B Grüning, V Bhardwaj, F Kilpert, AS Richter, ...
Nucleic acids research 44 (W1), W160-W165, 2016
29112016
Paternal diet defines offspring chromatin state and intergenerational obesity
A Öst, A Lempradl, E Casas, M Weigert, T Tiko, M Deniz, L Pantano, ...
Cell 159 (6), 1352-1364, 2014
3272014
Freiburg RNA Tools: a web server integrating IntaRNA, ExpaRNA and LocARNA
C Smith, S Heyne, AS Richter, S Will, R Backofen
Nucleic acids research 38 (suppl_2), W373-W377, 2010
2342010
Trim28 haploinsufficiency triggers bi-stable epigenetic obesity
K Dalgaard, K Landgraf, S Heyne, A Lempradl, J Longinotto, K Gossens, ...
Cell 164 (3), 353-364, 2016
1682016
GraphClust: alignment-free structural clustering of local RNA secondary structures
S Heyne, F Costa, D Rose, R Backofen
Bioinformatics 28 (12), i224-i232, 2012
952012
The Polycomb-Dependent Epigenome Controls β Cell Dysfunction, Dedifferentiation, and Diabetes
L TT, H S, D E, C E, L L, B T, Y CH, Sagar, A L, D K, T R, E L, S M, R M, ...
Cell Metabolism 27 (6), 1294-1308, 2018
782018
Freiburg RNA tools: a central online resource for RNA-focused research and teaching
M Raden, SM Ali, OS Alkhnbashi, A Busch, F Costa, JA Davis, ...
Nucleic acids research 46 (W1), W25-W29, 2018
752018
snakePipes: facilitating flexible, scalable and integrative epigenomic analysis
V Bhardwaj, S Heyne, K Sikora, L Rabbani, M Rauer, F Kilpert, AS Richter, ...
Bioinformatics 35 (22), 4757-4759, 2019
612019
Lightweight comparison of RNAs based on exact sequence–structure matches
S Heyne, S Will, M Beckstette, R Backofen
Bioinformatics 25 (16), 2095-2102, 2009
372009
LocARNAscan: Incorporating thermodynamic stability in sequence and structure-based RNA homology search.
S Will, MF Siebauer, S Heyne, J Engelhardt, PF Stadler, K Reiche, ...
Algorithms for Molecular Biology 8 (1), 14, 2013
192013
ExpaRNA-P: simultaneous exact pattern matching and folding of RNAs
C Otto, M Möhl, S Heyne, M Amit, GM Landau, R Backofen, S Will
BMC bioinformatics 15 (1), 404, 2014
162014
CRUP: A comprehensive framework to predict condition-specific regulatory units
A Ramisch, V Heinrich, LV Glaser, A Fuchs, X Yang, P Benner, ...
Genome biology 20 (1), 1-23, 2019
122019
Navigating the unexplored seascape of pre-miRNA candidates in single-genome approaches
ND Mendes, S Heyne, AT Freitas, MF Sagot, R Backofen
Bioinformatics 28 (23), 3034-3041, 2012
112012
Local exact pattern matching for non-fixed RNA structures
M Amit, R Backofen, S Heyne, GM Landau, M Möhl, C Otto, S Will
IEEE/ACM transactions on computational biology and bioinformatics 11 (1 …, 2014
102014
Empowering the annotation and discovery of structured RNAs with scalable and accessible integrative clustering
M Miladi, E Sokhoyan, T Houwaart, S Heyne, F Costa, B Grüning, ...
bioRxiv, 550335, 2019
9*2019
Activation of a GPCR leads to eIF4G phosphorylation at the 5 0 cap and to IRES-dependent translation
C Gauthier, L Dupuy, S Heyne, R Backofen
Endocrinology 52, 373-382, 2014
92014
Exact pattern matching for RNA structure ensembles
C Schmiedl, M Möhl, S Heyne, M Amit, GM Landau, S Will, R Backofen
Annual International Conference on Research in Computational Molecular …, 2012
62012
RNAclust. pl Documentation
J Engelhardt, S Heyne, S Will, K Reiche
22010
CRUP: A comprehensive framework to predict condition-specific regulatory units
V Heinrich, A Ramisch, LV Glaser, A Fuchs, X Yang, P Benner, ...
EUROPEAN JOURNAL OF HUMAN GENETICS 27, 1730-1730, 2019
2019
snakePipes enable flexible, scalable and integrative epigenomic analysis
V Bhardwaj, S Heyne, K Sikora, L Rabbani, M Rauer, F Kilpert, AS Richter, ...
bioRxiv, 407312, 2018
2018
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Articles 1–20