Fabian Amman

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Peter F StadlerProfessor of Bioinformatics, Univ. LeipzigVerified email at bioinf.uni-leipzig.de
Ivo HofackerUniversity of ViennaVerified email at tbi.univie.ac.at
Udo BläsiProfessor of Molecular MicrobiologyVerified email at univie.ac.at
Michael T. WolfingerPrincipal Investigator at University of Vienna / Founder & CEO at RNAForecastVerified email at univie.ac.at
Michael F. JantschMedical University of Vienna, Division of Cell- and Developmental BiologyVerified email at muv.ac.at
Stephan BernhartBioinformatik, Universitaet LeipzigVerified email at bioinf.uni-leipzig.de
Ronny LorenzVerified email at tbi.univie.ac.at
Konstantin LichtStaff Scientist, Public Health Office Baden-WürttembergVerified email at sm.bwl.de
Andreas BergthalerMedical University of Vienna // CeMM, Austrian Academy of SciencesVerified email at meduniwien.ac.at
Utkarsh Kapoor, PhDSt. Anna CCRI, CeMM, University of ViennaVerified email at ccri.at
Christian Höner zu SiederdissenUniversität JenaVerified email at uni-jena.de
Lydia MüllerUniversity of LeipzigVerified email at informatik.uni-leipzig.de
Lars BarquistUniversity of Toronto; Helmholtz Institute for RNA-based Infection ResearchVerified email at helmholtz-hiri.de
Jörg VogelHelmholtz Institute for RNA-based Infection ResearchVerified email at helmholtz-hiri.de
Konrad U. FörstnerZB MED - Information Centre for Life Sciences & TH KölnVerified email at zbmed.de
Andrea TanzerMedical University of ViennaVerified email at univie.ac.at
David HotLab director, Transcriptomics & Applied Genomics, Institut Pasteur de LilleVerified email at pasteur-lille.fr
Florian EggenhoferBioinformatics Group, Department of Computer Science, Albert-Ludwigs-University FreiburgVerified email at informatik.uni-freiburg.de
Jörg FallmannBioinformatics, University of LeipzigVerified email at bioinf.uni-leipzig.de
Muralidhar TataAir ProteinVerified email at airprotein.com

Fabian Amman

CeMM

Verified email at meduniwien.ac.at

pathogenomics environmental pathogen surveillance RNA biology


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Dual RNA-seq unveils noncoding RNA functions in host–pathogen interactions AJ Westermann, KU Förstner, F Amman, L Barquist, Y Chao, LN Schulte, ... Nature 529 (7587), 496-501, 2016	515	2016
Inosine induces context-dependent recoding and translational stalling K Licht, M Hartl, F Amman, D Anrather, MP Janisiw, MF Jantsch Nucleic acids research 47 (1), 3-14, 2019	148	2019
Viral variant-resolved wastewater surveillance of SARS-CoV-2 at national scale F Amman, R Markt, L Endler, S Hupfauf, B Agerer, A Schedl, L Richter, ... Nature biotechnology 40 (12), 1814-1822, 2022	142	2022
A high resolution A-to-I editing map in the mouse identifies editing events controlled by pre-mRNA splicing K Licht, U Kapoor, F Amman, E Picardi, D Martin, P Bajad, MF Jantsch Genome research 29 (9), 1453-1463, 2019	111	2019
Transcriptional responses to IFN-γ require mediator kinase-dependent pause release and mechanistically distinct CDK8 and CDK19 functions I Steinparzer, V Sedlyarov, JD Rubin, K Eislmayr, MD Galbraith, ... Molecular cell 76 (3), 485-499. e8, 2019	76	2019
Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells M Hölzer, V Krähling, F Amman, E Barth, SH Bernhart, VAO Carmelo, ... Scientific reports 6 (1), 34589, 2016	69	2016
TSSAR: TSS annotation regime for dRNA-seq data F Amman, MT Wolfinger, R Lorenz, IL Hofacker, PF Stadler, S Findeiß BMC bioinformatics 15, 1-11, 2014	66	2014
Archaeal signal transduction: impact of protein phosphatase deletions on cell size, motility, and energy metabolism in Sulfolobus acidocaldarius J Reimann, D Esser, A Orell, F Amman, TK Pham, J Noirel, AC Lindås, ... Molecular & cellular proteomics 12 (12), 3908-3923, 2013	63	2013
Fast accessibility-based prediction of RNA–RNA interactions H Tafer, F Amman, F Eggenhofer, PF Stadler, IL Hofacker Bioinformatics 27 (14), 1934-1940, 2011	59	2011
Wastewater monitoring can anchor global disease surveillance systems A Keshaviah, MB Diamond, MJ Wade, SV Scarpino, W Ahmed, F Amman, ... The Lancet Global Health 11 (6), e976-e981, 2023	55	2023
Impact of Hfq on the Bacillus subtilis Transcriptome H Hämmerle, F Amman, B Večerek, J Stülke, I Hofacker, U Blaesi PloS one 9 (6), e98661, 2014	55	2014
2D meets 4G: G-quadruplexes in RNA secondary structure prediction R Lorenz, SH Bernhart, J Qin, CH zu Siederdissen, A Tanzer, F Amman, ... IEEE/ACM transactions on computational biology and bioinformatics 10 (4 …, 2013	53	2013
Functional characterization of the human tRNA methyltransferases TRMT10A and TRMT10B E Vilardo, F Amman, U Toth, A Kotter, M Helm, W Rossmanith Nucleic acids research 48 (11), 6157-6169, 2020	50	2020
Accurate mapping of tRNA reads A Hoffmann, J Fallmann, E Vilardo, M Mörl, PF Stadler, F Amman Bioinformatics 34 (7), 1116-1124, 2018	50	2018
RNA_Seq Based Transcriptional Profiling of Pseudomonas aeruginosa PA14 after Short- and Long-Term Anoxic Cultivation in Synthetic Cystic Fibrosis Sputum … M Tata, MT Wolfinger, F Amman, N Roschanski, A Dötsch, E Sonnleitner, ... PLoS One 11 (1), e0147811, 2016	50	2016
ADAR-deficiency perturbs the global splicing landscape in mouse tissues U Kapoor, K Licht, F Amman, T Jakobi, D Martin, C Dieterich, MF Jantsch Genome research 30 (8), 1107-1118, 2020	47	2020
Primary transcriptome analysis reveals importance of IS elements for the shaping of the transcriptional landscape of Bordetella pertussis F Amman, A D'Halluin, R Antoine, L Huot, I Bibova, K Keidel, S Slupek, ... RNA biology 15 (7), 967-975, 2018	44	2018
Animal snoRNAs and scaRNAs with exceptional structures M Marz, AR Gruber, C Höner zu Siederdissen, F Amman, S Badelt, ... RNA biology 8 (6), 938-946, 2011	44	2011
An internal deletion of ADAR rescued by MAVS deficiency leads to a minute phenotype P Bajad, F Ebner, F Amman, B Szabó, U Kapoor, G Manjali, A Hildebrandt, ... Nucleic acids research 48 (6), 3286-3303, 2020	43	2020
Transcriptional profiling of Bordetella pertussis reveals requirement of RNA chaperone Hfq for Type III secretion system functionality I Bibova, D Hot, K Keidel, F Amman, S Slupek, O Cerny, R Gross, ... RNA biology 12 (2), 175-185, 2015	39	2015

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