Fabian Amman
Fabian Amman
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Dual RNA-seq unveils noncoding RNA functions in host–pathogen interactions
AJ Westermann, KU Förstner, F Amman, L Barquist, Y Chao, LN Schulte, ...
Nature 529 (7587), 496-501, 2016
Inosine induces context-dependent recoding and translational stalling
K Licht, M Hartl, F Amman, D Anrather, MP Janisiw, MF Jantsch
Nucleic acids research 47 (1), 3-14, 2019
A high resolution A-to-I editing map in the mouse identifies editing events controlled by pre-mRNA splicing
K Licht, U Kapoor, F Amman, E Picardi, D Martin, P Bajad, MF Jantsch
Genome research 29 (9), 1453-1463, 2019
Viral variant-resolved wastewater surveillance of SARS-CoV-2 at national scale
F Amman, R Markt, L Endler, S Hupfauf, B Agerer, A Schedl, L Richter, ...
Nature biotechnology 40 (12), 1814-1822, 2022
TSSAR: TSS annotation regime for dRNA-seq data
F Amman, MT Wolfinger, R Lorenz, IL Hofacker, PF Stadler, S Findeiß
BMC bioinformatics 15 (1), 1-11, 2014
Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells
M Hölzer, V Krähling, F Amman, E Barth, SH Bernhart, VAO Carmelo, ...
Scientific reports 6 (1), 34589, 2016
Transcriptional responses to IFN-γ require mediator kinase-dependent pause release and mechanistically distinct CDK8 and CDK19 functions
I Steinparzer, V Sedlyarov, JD Rubin, K Eislmayr, MD Galbraith, ...
Molecular cell 76 (3), 485-499. e8, 2019
Archaeal signal transduction: impact of protein phosphatase deletions on cell size, motility, and energy metabolism in Sulfolobus acidocaldarius
J Reimann, D Esser, A Orell, F Amman, TK Pham, J Noirel, AC Lindås, ...
Molecular & cellular proteomics 12 (12), 3908-3923, 2013
Fast accessibility-based prediction of RNA–RNA interactions
H Tafer, F Amman, F Eggenhofer, PF Stadler, IL Hofacker
Bioinformatics 27 (14), 1934-1940, 2011
Impact of Hfq on the Bacillus subtilis Transcriptome
H Hämmerle, F Amman, B Večerek, J Stülke, I Hofacker, U Blaesi
PloS one 9 (6), e98661, 2014
RNASeq Based Transcriptional Profiling of Pseudomonas aeruginosa PA14 after Short- and Long-Term Anoxic Cultivation in Synthetic Cystic Fibrosis Sputum …
M Tata, MT Wolfinger, F Amman, N Roschanski, A Dötsch, E Sonnleitner, ...
PLoS One 11 (1), e0147811, 2016
2D meets 4G: G-quadruplexes in RNA secondary structure prediction
R Lorenz, SH Bernhart, J Qin, CH zu Siederdissen, A Tanzer, F Amman, ...
IEEE/ACM Transactions on Computational Biology and Bioinformatics 10 (4 …, 2013
Accurate mapping of tRNA reads
A Hoffmann, J Fallmann, E Vilardo, M Mörl, PF Stadler, F Amman
Bioinformatics 34 (7), 1116-1124, 2018
Functional characterization of the human tRNA methyltransferases TRMT10A and TRMT10B
E Vilardo, F Amman, U Toth, A Kotter, M Helm, W Rossmanith
Nucleic acids research 48 (11), 6157-6169, 2020
Primary transcriptome analysis reveals importance of IS elements for the shaping of the transcriptional landscape of Bordetella pertussis
F Amman, A D'Halluin, R Antoine, L Huot, I Bibova, K Keidel, S Slupek, ...
RNA biology 15 (7), 967-975, 2018
Animal snoRNAs and scaRNAs with exceptional structures
M Marz, AR Gruber, C Höner zu Siederdissen, F Amman, S Badelt, ...
RNA biology 8 (6), 938-946, 2011
An internal deletion of ADAR rescued by MAVS deficiency leads to a minute phenotype
P Bajad, F Ebner, F Amman, B Szabó, U Kapoor, G Manjali, A Hildebrandt, ...
Nucleic acids research 48 (6), 3286-3303, 2020
ViennaNGS: A toolbox for building efficient next-generation sequencing analysis pipelines
MT Wolfinger, J Fallmann, F Eggenhofer, F Amman
F1000Research 4, 2015
ADAR-deficiency perturbs the global splicing landscape in mouse tissues
U Kapoor, K Licht, F Amman, T Jakobi, D Martin, C Dieterich, MF Jantsch
Genome research 30 (8), 1107-1118, 2020
Transcriptional profiling of Bordetella pertussis reveals requirement of RNA chaperone Hfq for Type III secretion system functionality
I Bibova, D Hot, K Keidel, F Amman, S Slupek, O Cerny, R Gross, ...
RNA biology 12 (2), 175-185, 2015
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