| A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping SSP Rao, MH Huntley, NC Durand, EK Stamenova, ID Bochkov, ... Cell 159 (7), 1665-1680, 2014 | 7292 | 2014 |
| Juicer provides a one-click system for analyzing loop-resolution Hi-C experiments NC Durand, MS Shamim, I Machol, SSP Rao, MH Huntley, ES Lander, ... Cell systems 3 (1), 95-98, 2016 | 2114 | 2016 |
| De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds O Dudchenko, SS Batra, AD Omer, SK Nyquist, M Hoeger, NC Durand, ... Science 356 (6333), 92-95, 2017 | 1556 | 2017 |
| Juicebox provides a visualization system for Hi-C contact maps with unlimited zoom NC Durand, JT Robinson, MS Shamim, I Machol, JP Mesirov, ES Lander, ... Cell systems 3 (1), 99-101, 2016 | 1233 | 2016 |
| The energetics and physiological impact of cohesin extrusion L Vian, A Pękowska, SSP Rao, KR Kieffer-Kwon, S Jung, L Baranello, ... Cell 173 (5), 1165-1178. e20, 2018 | 519 | 2018 |
| Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture EM Darrow, MH Huntley, O Dudchenko, EK Stamenova, NC Durand, ... Proceedings of the National Academy of Sciences 113 (31), E4504-E4512, 2016 | 283 | 2016 |
| Static and dynamic DNA loops form AP-1-bound activation hubs during macrophage development DH Phanstiel, K Van Bortle, D Spacek, GT Hess, MS Shamim, I Machol, ... Molecular cell 67 (6), 1037-1048. e6, 2017 | 260 | 2017 |
| Genetic determinants of co-accessible chromatin regions in activated T cells across humans RE Gate, CS Cheng, AP Aiden, A Siba, M Tabaka, D Lituiev, I Machol, ... Nature genetics 50 (8), 1140-1150, 2018 | 161 | 2018 |
| Juicer provides a one-click system for analyzing loop-resolution Hi-C experiments. Cell Syst 3: 95–98 NC Durand, MS Shamim, I Machol, SSP Rao, MH Huntley, ES Lander, ... | 72 | 2016 |
| Hybrid de novo genome assembly and centromere characterization of the gray mouse lemur (Microcebus murinus) PA Larsen, RA Harris, Y Liu, SC Murali, CR Campbell, AD Brown, ... BMC biology 15, 1-17, 2017 | 56 | 2017 |
| Detection of low-level parental somatic mosaicism for clinically relevant SNVs and indels identified in a large exome sequencing dataset DD Domogala, T Gambin, R Zemet, CW Wu, KV Schulze, Y Yang, ... Human Genomics 15, 1-11, 2021 | 13 | 2021 |
| Hi-C yields chromosome-length scaffolds for a legume genome, Trifolium subterraneum O Dudchenko, M Pham, C Lui, SS Batra, M Hoeger, SK Nyquist, ... bioRxiv, 473553, 2018 | 7 | 2018 |
| Evaluation of an automated genome interpretation model for rare disease routinely used in a clinical genetic laboratory L Meng, R Attali, T Talmy, Y Regev, N Mizrahi, P Smirin-Yosef, L Vossaert, ... Genetics in Medicine 25 (6), 100830, 2023 | 5 | 2023 |
| Genetic determinants of chromatin accessibility and gene regulation in T cell activation across human individuals CS Cheng, RE Gate, AP Aiden, A Siba, M Tabaka, D Lituiev, I Machol, ... bioRxiv 90241 (2016), 2016 | 5 | 2016 |
| Altered Vision Via Streamed Optical Remapping MS Shamim, SSP Rao, I Machol, EL Aiden US Patent App. 15/506,104, 2018 | 2 | 2018 |
| Correction to: Whole exome sequencing identifies novel candidate genes that modify chronic obstructive pulmonary disease susceptibility S Bruse, M Moreau, Y Bromberg, JH Jang, N Wang, H Ha, M Picchi, Y Lin, ... Human Genomics 15, 2021 | | 2021 |
| Genetic determinants of chromatin accessibility in T cell activation across humans RE Gate, CS Cheng, AP Aiden, A Siba, M Tabaka, D Lituiev, I Machol, ... | | 2016 |
| Crispr Engineering in CD34+ Progenitors Reveals Cis-Acting Regulatory Regions Mediating 3D Interactions and Stem Cell Fate Decisions M Jeong, Y Lei, I Bochkov, MS Shamim, AG Guzman, SC Huang, ... Blood 128 (22), 1466, 2016 | | 2016 |
| Hi-C yields chromosome-length scaffolds for a legume genome, Trifolium O Dudchenko, M Pham, C Lui, SS Batra, M Hoeger, SK Nyquist, ... | | |
