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Kazuhiro Takemoto
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PREvaIL, an integrative approach for inferring catalytic residues using sequence, structural, and network features in a machine-learning framework
J Song, F Li, K Takemoto, G Haffari, T Akutsu, KC Chou, GI Webb
Journal of theoretical biology 443, 125-137, 2018
1172018
Identification of chemogenomic features from drug–target interaction networks using interpretable classifiers
Y Tabei, E Pauwels, V Stoven, K Takemoto, Y Yamanishi
Bioinformatics 28 (18), i487-i494, 2012
842012
Difficulty in inferring microbial community structure based on co-occurrence network approaches
H Hirano, K Takemoto
BMC bioinformatics 20 (1), 1-14, 2019
752019
HSEpred: predict half-sphere exposure from protein sequences
J Song, H Tan, K Takemoto, T Akutsu
Bioinformatics 24 (13), 1489-1497, 2008
572008
An automated system for evaluation of the potential functionome: MAPLE version 2.1. 0
H Takami, T Taniguchi, W Arai, K Takemoto, Y Moriya, S Goto
Dna Research 23 (5), 467-475, 2016
562016
FunSAV: predicting the functional effect of single amino acid variants using a two-stage random forest model
M Wang, XM Zhao, K Takemoto, H Xu, Y Li, T Akutsu, J Song
Public Library of Science 7 (8), e43847, 2012
462012
Correlation between structure and temperature in prokaryotic metabolic networks
K Takemoto, JC Nacher, T Akutsu
BMC bioinformatics 8 (1), 1-11, 2007
452007
Heterogeneity in ecological mutualistic networks dominantly determines community stability
W Feng, K Takemoto
Scientific reports 4 (1), 1-11, 2014
442014
MAPLE 2.3. 0: an improved system for evaluating the functionomes of genomes and metagenomes
W Arai, T Taniguchi, S Goto, Y Moriya, H Uehara, K Takemoto, H Ogata, ...
Bioscience, biotechnology, and biochemistry 82 (9), 1515-1517, 2018
392018
Evolving networks by merging cliques
K Takemoto, C Oosawa
Physical Review E 72 (4), 046116, 2005
362005
Universal adversarial attacks on deep neural networks for medical image classification
H Hirano, A Minagi, K Takemoto
BMC medical imaging 21 (1), 1-13, 2021
312021
An integrative computational framework based on a two-step random forest algorithm improves prediction of zinc-binding sites in proteins
C Zheng, M Wang, K Takemoto, T Akutsu, Z Zhang, J Song
PLoS One 7 (11), e49716, 2012
312012
Modeling for evolving biological networks with scale-free connectivity, hierarchical modularity, and disassortativity
K Takemoto, C Oosawa
Mathematical biosciences 208 (2), 454-468, 2007
282007
Global COVID-19 transmission rate is influenced by precipitation seasonality and the speed of climate temperature warming
K Chiyomaru, K Takemoto
MedRxiv, 2020
272020
Finding minimum reaction cuts of metabolic networks under a boolean model using integer programming and feedback vertex sets
T Tamura, K Takemoto, T Akutsu
International Journal of Knowledge Discovery in Bioinformatics (IJKDB) 1 (1 …, 2010
262010
Large-scale aggregation analysis of eukaryotic proteins reveals an involvement of intrinsically disordered regions in protein folding
E Uemura, T Niwa, S Minami, K Takemoto, S Fukuchi, K Machida, ...
Scientific reports 8 (1), 1-11, 2018
242018
Climatic seasonality may affect ecological network structure: Food webs and mutualistic networks
K Takemoto, S Kanamaru, W Feng
Biosystems 121, 29-37, 2014
242014
Introduction to complex networks: measures, statistical properties, and models
K TAkEMOTO, C Oosawa
Statistical and machine learning approaches for network analysis, 45-75, 2012
242012
Human impacts and climate change influence nestedness and modularity in food-web and mutualistic networks
K Takemoto, K Kajihara
PLoS One 11 (6), e0157929, 2016
232016
Structure of n-clique networks embedded in a complex network
K Takemoto, C Oosawa, T Akutsu
Physica A: Statistical Mechanics and its Applications 380, 665-672, 2007
232007
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Articles 1–20