Thomas van Gurp
Thomas van Gurp
Senior Bioinformatics scientist
Bestätigte E-Mail-Adresse bei naktuinbouw.nl
Titel
Zitiert von
Zitiert von
Jahr
Ecological plant epigenetics: Evidence from model and non‐model species, and the way forward
CL Richards, C Alonso, C Becker, O Bossdorf, E Bucher, ...
Ecology letters 20 (12), 1576-1590, 2017
1872017
Transgenerational Effects of Stress Exposure on Offspring Phenotypes in Apomictic Dandelion
KJF Verhoeven, TP van Gurp
PloS one 7 (6), e38605, 2012
1122012
epiGBS: reference-free reduced representation bisulfite sequencing
TP van Gurp, NCAM Wagemaker, B Wouters, P Vergeer, JNJ Ouborg, ...
Nature methods 13 (4), 322-324, 2016
842016
Consistent errors in first strand cDNA due to random hexamer mispriming
TP van Gurp, LM McIntyre, KJF Verhoeven
PloS one 8 (12), e85583, 2013
452013
SNP markers retrieval for a non-model species: a practical approach
A Shahin, T van Gurp, SA Peters, RGF Visser, JM van Tuyl, P Arens
BMC Research Notes 5 (1), 1-11, 2012
312012
Evidence for rapid evolution in a grassland biodiversity experiment
SJ van Moorsel, MW Schmid, NCAM Wagemaker, T van Gurp, B Schmid, ...
Molecular Ecology 28 (17), 4097-4117, 2019
222019
Recent and dynamic transposable elements contribute to genomic divergence under asexuality
JF de Carvalho, V de Jager, TP van Gurp, NCAM Wagemaker, ...
BMC genomics 17 (1), 1-12, 2016
222016
Intergenerational environmental effects: functional signals in offspring transcriptomes and metabolomes after parental jasmonic acid treatment in apomictic dandelion
KJF Verhoeven, EH Verbon, TP van Gurp, C Oplaat, ...
new phytologist 217 (2), 871-882, 2018
102018
AlphaBeta: computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
Y Shahryary, A Symeonidi, RR Hazarika, J Denkena, T Mubeen, ...
Genome biology 21 (1), 1-22, 2020
62020
epiGBS2: An improved protocol and automated snakemake workflow for highly multiplexed reduced representation bisulfite sequencing
F Gawehns, M Postuma, TP van Gurp, NCAM Wagemaker, S Fatma, ...
bioRxiv, 2020
62020
Reduced representation characterization of genetic and epigenetic differentiation to oil pollution in the foundation plant Spartina alterniflora
M Alvarez, M Robertson, T van Gurp, N Wagemaker, D Giraud, ...
BioRxiv, 426569, 2020
62020
msGBS: A new high-throughput approach to quantify the relative species abundance in root samples of multispecies plant communities
CAM Wagemaker, L Mommer, EJW Visser, A Weigelt, TP van Gurp, ...
32021
Combining epiGBS markers with long read transcriptome sequencing to assess differentiation associated with habitat in Reynoutria (aka Fallopia)
MH Robertson, MF Alvarez, TP van Gurp, NCAM Wagemaker, F Yu, ...
bioRxiv, 2020
12020
Epigenome-wide response to oil pollution in the foundation plant Spartina alterniflora
M Alvarez, M Robertson, T van Gurp, CAM Wagemaker, D Giraud, ...
Biorxiv, 426569, 2019
12019
Ecological Epigenetics in Polyploid Spartina
C Richards, ML Ainouche, M Alvarez, O Bossdorf, A Cavé-Radet, ...
Plant and Animal Genome XXVIII Conference (January 11-15, 2020), 2020
2020
Data from: Intergenerational environmental effects: functional signals in offspring transcriptomes and metabolomes after parental jasmonic acid treatment in apomictic dandelion
KJF Verhoeven, EH Verbon, TP van Gurp, C Oplaat, ...
Dryad, 2018
2018
Data from: Recent and dynamic transposable elements contribute to genomic divergence under asexuality
J Ferreira de Carvalho, V Jager, TP van Gurp, N Wagemaker, ...
Dryad, 2017
2017
Measuring stress-induced DNA methylation in apomictic Dandelions
TP van Gurp
PQDT-Global, 2017
2017
EpiGBS lab protocol
N Wagemaker, P Vergeer, T van Gurp, K Verhoeven
2016
Discovery of SNP markers in Onion and Leek
T van Gurp, S van Heusden, G van der Linden, O Scholten
2012
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