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Stefan Washietl
Stefan Washietl
Computer Science and Artificial Intelligence Lab, MIT
Verified email at mit.edu
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Cited by
Cited by
Year
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ...
nature 447 (7146), 799-816, 2007
60742007
A high-resolution map of human evolutionary constraint using 29 mammals
K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ...
Nature 478 (7370), 476-482, 2011
12842011
Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ...
Science 330 (6012), 1787-1797, 2010
10922010
Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo
S Rouskin, M Zubradt, S Washietl, M Kellis, JS Weissman
Nature 505 (7485), 701-705, 2014
8892014
Fast and reliable prediction of noncoding RNAs
S Washietl, IL Hofacker, PF Stadler
Proceedings of the National Academy of Sciences 102 (7), 2454-2459, 2005
8662005
Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome
S Washietl, IL Hofacker, M Lukasser, A Hüttenhofer, PF Stadler
Nature biotechnology 23 (11), 1383-1390, 2005
4792005
Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals
S Washietl, M Kellis, M Garber
Genome research 24 (4), 616-628, 2014
4132014
A benchmark of multiple sequence alignment programs upon structural RNAs
PP Gardner, A Wilm, S Washietl
Nucleic acids research 33 (8), 2433-2439, 2005
3682005
Oviduct: roles in fertilization and early embryo development
S Li, W Winuthayanon
J Endocrinol 232 (1), R1-R26, 2017
355*2017
RNAz 2.0: improved noncoding RNA detection
AR Gruber, S Findeiß, S Washietl, IL Hofacker, PF Stadler
Biocomputing 2010, 69-79, 2010
3322010
miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes
PWC Hsu, HD Huang, SD Hsu, LZ Lin, AP Tsou, CP Tseng, PF Stadler, ...
Nucleic acids research 34 (suppl_1), D135-D139, 2006
2602006
Structured RNAs in the ENCODE selected regions of the human genome
S Washietl, JS Pedersen, JO Korbel, C Stocsits, AR Gruber, ...
Genome research 17 (6), 852-864, 2007
2252007
RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data
S Washietl, S Findeiß, SA Müller, S Kalkhof, M Von Bergen, IL Hofacker, ...
Rna 17 (4), 578-594, 2011
2232011
Consensus folding of aligned sequences as a new measure for the detection of functional RNAs by comparative genomics
S Washietl, IL Hofacker
Journal of molecular biology 342 (1), 19-30, 2004
2002004
Protein prenyltransferases
S Maurer-Stroh, S Washietl, F Eisenhaber
Genome biology 4, 1-9, 2003
1882003
RNA folding with soft constraints: reconciliation of probing data and thermodynamic secondary structure prediction
S Washietl, IL Hofacker, PF Stadler, M Kellis
Nucleic acids research 40 (10), 4261-4272, 2012
1332012
New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes
BJ Parker, I Moltke, A Roth, S Washietl, J Wen, M Kellis, R Breaker, ...
Genome research 21 (11), 1929-1943, 2011
1302011
The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures
AR Gruber, R Neuböck, IL Hofacker, S Washietl
Nucleic acids research 35 (suppl_2), W335-W338, 2007
1172007
Strategies for measuring evolutionary conservation of RNA secondary structures
AR Gruber, SH Bernhart, IL Hofacker, S Washietl
BMC bioinformatics 9, 1-19, 2008
1042008
Evolutionary patterns of non-coding RNAs
AF Bompfünewerer, C Flamm, C Fried, G Fritzsch, IL Hofacker, ...
Theory in Biosciences 123 (4), 301-369, 2005
962005
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Articles 1–20