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M. Stanley Fujimoto
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Overcoming the loss of blue sensitivity through opsin duplication in the largest animal group, beetles
CR Sharkey, MS Fujimoto, NP Lord, S Shin, DD McKenna, A Suvorov, ...
Scientific Reports 7 (1), 1-10, 2017
442017
Opsins have evolved under the permanent heterozygote model: insights from phylotranscriptomics of Odonata
A Suvorov, NO Jensen, CR Sharkey, MS Fujimoto, P Bodily, ...
Molecular ecology 26 (5), 1306-1322, 2017
222017
Effects of error-correction of heterozygous next-generation sequencing data
MS Fujimoto, PM Bodily, N Okuda, MJ Clement, Q Snell
BMC bioinformatics 15 (7), S3, 2014
212014
Detecting false positive sequence homology: a machine learning approach
MS Fujimoto, A Suvorov, NO Jensen, MJ Clement, SM Bybee
BMC bioinformatics 17 (1), 1-11, 2016
172016
A novel approach for multi-SNP GWAS and its application in Alzheimer’s disease
PM Bodily, MS Fujimoto, JT Page, MJ Clement, MTW Ebbert, PG Ridge
BMC bioinformatics 17 (7), 455-463, 2016
142016
Heterozygous genome assembly via binary classification of homologous sequence
PM Bodily, MS Fujimoto, C Ortega, N Okuda, JC Price, MJ Clement, ...
BMC bioinformatics 16 (7), 1-10, 2015
122015
ScaffoldScaffolder: solving contig orientation via bidirected to directed graph reduction
PM Bodily, MS Fujimoto, Q Snell, D Ventura, MJ Clement
Bioinformatics 32 (1), 17-24, 2016
102016
The OGCleaner: filtering false-positive homology clusters
MS Fujimoto, A Suvorov, NO Jensen, MJ Clement, Q Snell, SM Bybee
Bioinformatics 33 (1), 125-127, 2017
92017
Deep ancestral introgression shapes evolutionary history of dragonflies and damselflies
A Suvorov, C Scornavacca, MS Fujimoto, P Bodily, M Clement, ...
Systematic Biology 71 (3), 526-546, 2022
52022
Genome Polymorphism Detection Through Relaxed de Bruijn Graph Construction
MS Fujimoto, C Lyman, A Suvorov, P Bodily, Q Snell, K Crandall, S Bybee, ...
2017 IEEE 17th International Conference on Bioinformatics and Bioengineering …, 2017
32017
The Polygraph: A Data Structure for Genome Alignment and Variation Detection
M Fujimoto, C Lyman, M Clement
Proceedings of 11th International Conference on Bioinformatics and …, 2019
22019
The PepSeq Pipeline: Software for antimicrobial motif discovery in randomly-generated peptide libraries
TD Jensen, KA Bresciano, E Dallon, MS Fujimoto, CA Lyman, E Stewart, ...
Proceedings of the 2018 ACM International Conference on Bioinformatics …, 2018
22018
Whole Genome Phylogenetic Tree Reconstruction Using Colored de Bruijn Graphs
CA Lyman, MS Fujimoto, A Suvorov, PM Bodily, Q Snell, KA Crandall, ...
arXiv preprint arXiv:1709.00164, 2017
22017
Application of a max-cut heuristic to the contig orientation problem in genome assembly
P Bodily, MJ Clement, Q Snell, JC Price, S Fujimoto, N Okuda
Proceedings of the International Conference on Bioinformatics, Computational …, 2013
22013
Automated Cause-of-Death Tagging from 1918 Ohio Death Records
J Price, M Clement, S Fujimoto, J Merrell, S Rawlings, A Bay
Available at SSRN 3781891, 2021
12021
GNUMAP 4.0: Space and Time Efficient NGS Read Mapping Using the FM-Index
MS Fujimoto, CA Lyman, PM Bodily
Insights Bioinform 1 (1), 1-8, 2018
12018
Modeling Global and local Codon Bias with Deep Language Models
MS Fujimoto, PM Bodily, CA Lyman, AJ Jacobsen, Q Snell, MJ Clement
Bioinformatics and Bioengineering (BIBE), 2017 IEEE 17th International …, 2017
12017
A structured approach to ensemble learning for Alzheimer's disease prediction
M Seeley, M Clement, C Giraud-Carrier, Q Snell, P Bodily, S Fujimoto
Proceedings of the 5th ACM Conference on Bioinformatics, Computational …, 2014
12014
Haplotype-centered mapping for improved alignments and genetic association studies
PM Bodily, MJ Clement, Q Snell, MS Fujimoto, PG Ridge
Proceedings of the 5th ACM Conference on Bioinformatics, Computational …, 2014
12014
Kcollections: A Fast and Efficient Library for K-mers
MS Fujimoto, CA Lyman, MJ Clement
2020 IEEE International Parallel and Distributed Processing Symposium …, 2020
2020
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Articles 1–20