M. Stanley Fujimoto
M. Stanley Fujimoto
Ancestry
Verified email at ancestry.com
Title
Cited by
Cited by
Year
Overcoming the loss of blue sensitivity through opsin duplication in the largest animal group, beetles
CR Sharkey, MS Fujimoto, NP Lord, S Shin, DD McKenna, A Suvorov, ...
Scientific reports 7 (1), 1-10, 2017
222017
Effects of error-correction of heterozygous next-generation sequencing data
MS Fujimoto, PM Bodily, N Okuda, MJ Clement, Q Snell
BMC bioinformatics 15 (7), S3, 2014
192014
Detecting false positive sequence homology: a machine learning approach
MS Fujimoto, A Suvorov, NO Jensen, MJ Clement, SM Bybee
BMC bioinformatics 17 (1), 101, 2016
162016
Opsins have evolved under the permanent heterozygote model: insights from phylotranscriptomics of Odonata
A Suvorov, NO Jensen, CR Sharkey, MS Fujimoto, P Bodily, ...
Molecular ecology 26 (5), 1306-1322, 2017
152017
Heterozygous genome assembly via binary classification of homologous sequence
PM Bodily, MS Fujimoto, C Ortega, N Okuda, JC Price, MJ Clement, ...
BMC bioinformatics 16 (S7), S5, 2015
112015
The OGCleaner: filtering false-positive homology clusters
MS Fujimoto, A Suvorov, NO Jensen, MJ Clement, Q Snell, SM Bybee
Bioinformatics 33 (1), 125-127, 2017
72017
ScaffoldScaffolder: solving contig orientation via bidirected to directed graph reduction
PM Bodily, MS Fujimoto, Q Snell, D Ventura, MJ Clement
Bioinformatics 32 (1), 17-24, 2016
62016
A novel approach for multi-SNP GWAS and its application in Alzheimer’s disease
PM Bodily, MS Fujimoto, JT Page, MJ Clement, MTW Ebbert, PG Ridge
BMC bioinformatics 17 (7), 455-463, 2016
52016
Genome Polymorphism Detection Through Relaxed de Bruijn Graph Construction
MS Fujimoto, C Lyman, A Suvorov, P Bodily, Q Snell, K Crandall, S Bybee, ...
2017 IEEE 17th International Conference on Bioinformatics and Bioengineering …, 2017
32017
The Polygraph: A Data Structure for Genome Alignment and Variation Detection
M Fujimoto, C Lyman, M Clement
Proceedings of 11th International Conference on Bioinformatics and …, 2019
22019
Whole Genome Phylogenetic Tree Reconstruction Using Colored de Bruijn Graphs
CA Lyman, MS Fujimoto, A Suvorov, PM Bodily, Q Snell, KA Crandall, ...
arXiv preprint arXiv:1709.00164, 2017
22017
Application of a max-cut heuristic to the contig orientation problem in genome assembly
P Bodily, MJ Clement, Q Snell, JC Price, S Fujimoto, N Okuda
Proceedings of the International Conference on Bioinformatics, Computational …, 2013
22013
GNUMAP 4.0: Space and Time Efficient NGS Read Mapping Using the FM-Index
MS Fujimoto, CA Lyman, PM Bodily
Insights Bioinform 1 (1), 1-8, 2018
12018
Haplotype-centered mapping for improved alignments and genetic association studies
PM Bodily, MJ Clement, Q Snell, MS Fujimoto, PG Ridge
Proceedings of the 5th ACM Conference on Bioinformatics, Computational …, 2014
12014
Graph-Based Whole Genome Phylogenomics
MS Fujimoto
2020
Kcollections: A Fast and Efficient Library for K-mers
MS Fujimoto, CA Lyman, MJ Clement
2020 IEEE International Parallel and Distributed Processing Symposium …, 2020
2020
Deep ancestral introgression shapes evolutionary history of dragonflies and damselflies
A Suvorov, C Scornavacca, MS Fujimoto, P Bodily, M Clement, ...
bioRxiv, 2020
2020
The PepSeq Pipeline: Software for Antimicrobial Motif Discovery in Randomly-Generated Peptide Libraries
TD Jensen, KA Bresciano, E Dallon, MS Fujimoto, CA Lyman, E Stewart, ...
Proceedings of the 2018 ACM International Conference on Bioinformatics …, 2018
2018
PROCEEDINGS-2017 IEEE 17TH INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOENGINEERING, BIBE 2017
A Asaithambi, S Roy, S Turlapaty, N Ahmed, K Bertels, Z Al-Ars, ...
Public health 508, 513, 2018
2018
Modeling Global and local Codon Bias with Deep Language Models
MS Fujimoto, PM Bodily, CA Lyman, AJ Jacobsen, Q Snell, MJ Clement
Bioinformatics and Bioengineering (BIBE), 2017 IEEE 17th International …, 2017
2017
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Articles 1–20