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Jaak Simm
Jaak Simm
Postdoctoral researcher, University of Leuven
Verified email at esat.kuleuven.be
Title
Cited by
Cited by
Year
GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks
T Moerman, S Aibar Santos, C Bravo González-Blas, J Simm, Y Moreau, ...
Bioinformatics 35 (12), 2159-2161, 2019
4622019
GRU-ODE-Bayes: Continuous modeling of sporadically-observed time series
E De Brouwer, J Simm, A Arany, Y Moreau
Advances in neural information processing systems 32, 2019
3862019
Characterization of the vaginal micro-and mycobiome in asymptomatic reproductive-age Estonian women
T Drell, T Lillsaar, L Tummeleht, J Simm, A Aaspõllu, E Väin, I Saarma, ...
PloS one 8 (1), e54379, 2013
3232013
Repurposing high-throughput image assays enables biological activity prediction for drug discovery
J Simm, G Klambauer, A Arany, M Steijaert, JK Wegner, E Gustin, ...
Cell chemical biology 25 (5), 611-618. e3, 2018
2372018
Easy hyperparameter search using optunity
M Claesen, J Simm, D Popovic, Y Moreau, B De Moor
arXiv preprint arXiv:1412.1114, 2014
1162014
The influence of different maternal microbial communities on the development of infant gut and oral microbiota
T Drell, J Štšepetova, J Simm, K Rull, A Aleksejeva, A Antson, V Tillmann, ...
Scientific reports 7 (1), 9940, 2017
982017
Evolution of bacterial consortia in spontaneously started rye sourdoughs during two months of daily propagation
M Bessmeltseva, E Viiard, J Simm, T Paalme, I Sarand
PLoS One 9 (4), e95449, 2014
952014
Tree-based ensemble multi-task learning method for classification and regression
J Simm, IM De Abril, M Sugiyama
IEICE TRANSACTIONS on Information and Systems 97 (6), 1677-1681, 2014
922014
Changes in the transcriptome of the human endometrial Ishikawa cancer cell line induced by estrogen, progesterone, tamoxifen, and mifepristone (RU486) as detected by RNA-sequencing
K Tamm-Rosenstein, J Simm, M Suhorutshenko, A Salumets, M Metsis
PloS one 8 (7), e68907, 2013
782013
The development of gut microbiota in critically ill extremely low birth weight infants assessed with 16S rRNA gene based sequencing
T Drell, I Lutsar, J Štšepetova, Ü Parm, T Metsvaht, ML Ilmoja, J Simm, ...
Gut microbes 5 (3), 304-503, 2014
772014
The complex microbiome from native semen to embryo culture environment in human in vitro fertilization procedure
J Štšepetova, J Baranova, J Simm, Ü Parm, T Rööp, S Sokmann, ...
Reproductive Biology and Endocrinology 18, 1-13, 2020
702020
High-throughput sequencing approach uncovers the miRNome of peritoneal endometriotic lesions and adjacent healthy tissues
M Saare, K Rekker, T Laisk-Podar, D Sõritsa, AM Roost, J Simm, ...
PLoS One 9 (11), e112630, 2014
672014
Research resource: small RNA-seq of human granulosa cells reveals miRNAs in FSHR and aromatase genes
A Velthut-Meikas, J Simm, T Tuuri, JS Tapanainen, M Metsis, A Salumets
Molecular endocrinology 27 (7), 1128-1141, 2013
662013
Melloddy: Cross-pharma federated learning at unprecedented scale unlocks benefits in qsar without compromising proprietary information
W Heyndrickx, L Mervin, T Morawietz, N Sturm, L Friedrich, A Zalewski, ...
Journal of chemical information and modeling 64 (7), 2331-2344, 2023
642023
ChemGrapher: optical graph recognition of chemical compounds by deep learning
M Oldenhof, A Arany, Y Moreau, J Simm
Journal of chemical information and modeling 60 (10), 4506-4517, 2020
622020
Linking drug target and pathway activation for effective therapy using multi-task learning
M Yang, J Simm, CC Lam, P Zakeri, GJP van Westen, Y Moreau, ...
Scientific reports 8 (1), 8322, 2018
622018
Hyperparameter tuning in python using optunity
M Claesen, J Simm, D Popovic, B Moor
Proceedings of the international workshop on technical computing for machine …, 2014
572014
Endometrial transcriptome analysis indicates superiority of natural over artificial cycles in recurrent implantation failure patients undergoing frozen embryo transfer
S Altmäe, K Tamm-Rosenstein, FJ Esteban, J Simm, L Kolberg, ...
Reproductive biomedicine online 32 (6), 597-613, 2016
542016
Towards practical privacy-preserving genome-wide association study
C Bonte, E Makri, A Ardeshirdavani, J Simm, Y Moreau, F Vercauteren
BMC bioinformatics 19, 1-12, 2018
532018
Diversity and stability of lactic acid bacteria in rye sourdoughs of four bakeries with different propagation parameters
E Viiard, M Bessmeltseva, J Simm, T Talve, A Aaspõllu, T Paalme, ...
PloS one 11 (2), e0148325, 2016
522016
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