| A map of human genome variation from population-scale sequencing 1000 Genomes Project Consortium Nature 467 (7319), 1061, 2010 | 7363 | 2010 |
| PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes NY Yu, JR Wagner, MR Laird, G Melli, S Rey, R Lo, P Dao, SC Sahinalp, ... Bioinformatics 26 (13), 1608-1615, 2010 | 1677 | 2010 |
| Personalized copy number and segmental duplication maps using next-generation sequencing C Alkan, JM Kidd, T Marques-Bonet, G Aksay, F Antonacci, F Hormozdiari, ... Nature genetics 41 (10), 1061, 2009 | 828 | 2009 |
| Demographic history and rare allele sharing among human populations S Gravel, BM Henn, RN Gutenkunst, AR Indap, GT Marth, AG Clark, F Yu, ... Proceedings of the National Academy of Sciences 108 (29), 11983-11988, 2011 | 565 | 2011 |
| deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data A McPherson, F Hormozdiari, A Zayed, R Giuliany, G Ha, MGF Sun, ... PLoS Comput Biol 7 (5), e1001138, 2011 | 506 | 2011 |
| Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes F Hormozdiari, C Alkan, EE Eichler, SC Sahinalp Genome research 19 (7), 1270-1278, 2009 | 368 | 2009 |
| Spatial genomic heterogeneity within localized, multifocal prostate cancer PC Boutros, M Fraser, NJ Harding, R De Borja, D Trudel, E Lalonde, ... Nature genetics 47 (7), 736-745, 2015 | 347 | 2015 |
| Genomic hallmarks of localized, non-indolent prostate cancer M Fraser, VY Sabelnykova, TN Yamaguchi, LE Heisler, J Livingstone, ... Nature 541 (7637), 359-364, 2017 | 328 | 2017 |
| Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa RD Morin, G Aksay, E Dolgosheina, HA Ebhardt, V Magrini, ER Mardis, ... Genome research 18 (4), 571-584, 2008 | 319 | 2008 |
| mrsFAST: a cache-oblivious algorithm for short-read mapping F Hach, F Hormozdiari, C Alkan, F Hormozdiari, I Birol, EE Eichler, ... Nature methods 7 (8), 576-577, 2010 | 304 | 2010 |
| The evolutionary history of 2,658 cancers M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ... Nature 578 (7793), 122-128, 2020 | 259 | 2020 |
| Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery F Hormozdiari, I Hajirasouliha, P Dao, F Hach, D Yorukoglu, C Alkan, ... Bioinformatics 26 (12), i350-i357, 2010 | 251 | 2010 |
| Applicability domains for classification problems: benchmarking of distance to models for Ames mutagenicity set I Sushko, S Novotarskyi, R Körner, AK Pandey, A Cherkasov, J Li, ... Journal of chemical information and modeling 50 (12), 2094-2111, 2010 | 198 | 2010 |
| The structure and evolution of centromeric transition regions within the human genome X She, JE Horvath, Z Jiang, G Liu, TS Furey, L Christ, R Clark, T Graves, ... Nature 430 (7002), 857-864, 2004 | 185 | 2004 |
| Biomolecular network motif counting and discovery by color coding N Alon, P Dao, I Hajirasouliha, F Hormozdiari, SC Sahinalp Bioinformatics 24 (13), i241-i249, 2008 | 178 | 2008 |
| From sequence to molecular pathology, and a mechanism driving the neuroendocrine phenotype in prostate cancer AV Lapuk, C Wu, AW Wyatt, A McPherson, BJ McConeghy, S Brahmbhatt, ... The Journal of pathology 227 (3), 286-297, 2012 | 164 | 2012 |
| Communication complexity of document exchange G Cormode, M Paterson, SC Sahinalp, U Vishkin Proc. of the 11th ACM-SIAM Annual Symposium on Discrete Algorithms, 197-206, 2000 | 163 | 2000 |
| Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome G Liu, S Zhao, JA Bailey, SC Sahinalp, C Alkan, E Tuzun, ED Green, ... Genome research 13 (3), 358-368, 2003 | 161 | 2003 |
| Efficient approximate and dynamic matching of patterns using a labeling paradigm SC Sahinalp, U Vishkin Proceedings of 37th Conference on Foundations of Computer Science, 320-328, 1996 | 154 | 1996 |
| Widespread and functional RNA circularization in localized prostate cancer S Chen, V Huang, X Xu, J Livingstone, F Soares, J Jeon, Y Zeng, JT Hua, ... Cell 176 (4), 831-843. e22, 2019 | 151 | 2019 |
Fereydoun HormozdiariAssistant Professor at University of California - DavisVerified email at ucdavis.edu
