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Nanjie Deng
Nanjie Deng
Bestätigte E-Mail-Adresse bei pace.edu
Titel
Zitiert von
Zitiert von
Jahr
Effect of block structure on the micellization and gelation of aqueous solutions of copolymers of ethylene oxide and butylene oxide
Z Yang, S Pickard, NJ Deng, RJ Barlow, D Attwood, C Booth
Macromolecules 27 (9), 2371-2379, 1994
1671994
Micellization of diblock and triblock copolymers in aqueous solution. New results for oxyethylene/oxybutylene copolymers E38B12 and E21B11E21. Comparison of oxyethylene …
YW Yang, NJ Deng, GE Yu, ZK Zhou, D Attwood, C Booth
Langmuir 11 (12), 4703-4711, 1995
871995
Micellization and gelation of block-copoly (oxyethylene/oxybutylene) in aqueous solution
S Tanodekaew, NJ Deng, S Smith, YW Yang, D Attwood, C Booth
The Journal of Physical Chemistry 97 (45), 11847-11852, 1993
811993
Indenoisoquinoline Topoisomerase Inhibitors Strongly Bind and Stabilize the MYC Promoter G-Quadruplex and Downregulate MYC
KB Wang, MSA Elsayed, G Wu, N Deng, M Cushman, D Yang
Journal of the American Chemical Society 141 (28), 11059-11070, 2019
772019
Free energy profile of RNA hairpins: a molecular dynamics simulation study
NJ Deng, P Cieplak
Biophysical journal 98 (4), 627-636, 2010
762010
Gelation of micellar solutions of diblock‐copoly (oxyethylene/oxybutylene) in aqueous K2SO4. An investigation of excluded volume effects
NJ Deng, YZ Luo, S Tanodekaew, N Bingham, D Attwood, C Booth
Journal of Polymer Science Part B: Polymer Physics 33 (7), 1085-1096, 1995
741995
How kinetics within the unfolded state affects protein folding: An analysis based on Markov state models and an ultra-long MD trajectory
N Deng, W Dai, RM Levy
The Journal of Physical Chemistry B 117 (42), 12787-12799, 2013
732013
Blind prediction of HIV integrase binding from the SAMPL4 challenge
DL Mobley, S Liu, NM Lim, KL Wymer, AL Perryman, S Forli, N Deng, J Su, ...
Journal of computer-aided molecular design 28, 327-345, 2014
682014
Distinguishing binders from false positives by free energy calculations: fragment screening against the flap site of HIV protease
N Deng, S Forli, P He, A Perryman, L Wickstrom, RSK Vijayan, ...
The Journal of Physical Chemistry B 119 (3), 976-988, 2015
672015
Effect of chain length on the micellization and gelation of block copoly (oxyethylene/oxybutylene/oxyethylene) E m B n E m
CV Nicolas, YZ Luo, NJ Deng, D Attwood, JH Collett, C Price, C Booth
Polymer 34, 138-144, 1993
671993
Virtual screening of integrase inhibitors by large scale binding free energy calculations: the SAMPL4 challenge
E Gallicchio, N Deng, P He, L Wickstrom, AL Perryman, DN Santiago, ...
Journal of computer-aided molecular design 28, 475-490, 2014
662014
Insights into the dynamics of HIV-1 protease: a kinetic network model constructed from atomistic simulations
N Deng, W Zheng, E Gallicchio, RM Levy
Journal of the American Chemical Society 133 (24), 9387-9394, 2011
592011
Kinetic network study of the diversity and temperature dependence of trp-cage folding pathways: Combining transition path theory with stochastic simulations
W Zheng, E Gallicchio, N Deng, M Andrec, RM Levy
The Journal of Physical Chemistry B 115 (6), 1512-1523, 2011
572011
Elucidating the energetics of entropically driven protein–ligand association: calculations of absolute binding free energy and entropy
N Deng, P Zhang, P Cieplak, L Lai
The Journal of Physical Chemistry B 115 (41), 11902-11910, 2011
512011
The mechanism of H171T resistance reveals the importance of Nδ-protonated His171 for the binding of allosteric inhibitor BI-D to HIV-1 integrase
A Slaughter, KA Jurado, N Deng, L Feng, JJ Kessl, N Shkriabai, RC Larue, ...
Retrovirology 11, 1-14, 2014
502014
HIV-1 integrase tetramers are the antiviral target of pyridine-based allosteric integrase inhibitors
PC Koneru, AC Francis, N Deng, SV Rebensburg, AC Hoyte, ...
Elife 8, e46344, 2019
442019
Resolving the ligand-binding specificity in c-MYC G-quadruplex DNA: absolute binding free energy calculations and SPR experiment
N Deng, L Wickstrom, P Cieplak, C Lin, D Yang
The Journal of Physical Chemistry B 121 (46), 10484-10497, 2017
442017
Comparing alchemical and physical pathway methods for computing the absolute binding free energy of charged ligands
N Deng, D Cui, BW Zhang, J Xia, J Cruz, R Levy
Physical Chemistry Chemical Physics 20 (25), 17081-17092, 2018
412018
Allosteric HIV‐1 integrase inhibitors promote aberrant protein multimerization by directly mediating inter‐subunit interactions: Structural and thermodynamic modeling studies
N Deng, A Hoyte, YE Mansour, MS Mohamed, JR Fuchs, AN Engelman, ...
Protein Science 25 (11), 1911-1917, 2016
402016
Micellisation and gelation of triblock copolymer of ethylene oxide and ε-caprolactone, CLnEmCLn, in aqueous solution
L Martini, D Attwood, JH Collett, CV Nicholas, S Tanodekaew, NJ Deng, ...
Journal of the Chemical Society, Faraday Transactions 90 (13), 1961-1966, 1994
371994
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