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Christian Höner zu Siederdissen
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ViennaRNA Package 2.0
R Lorenz, SH Bernhart, C Höner zu Siederdissen, H Tafer, C Flamm, ...
Algorithms for Molecular Biology 6 (1), 26, 2011
35932011
Animal snoRNAs and scaRNAs with exceptional structures
M Marz, AR Gruber, C Höner zu Siederdissen, F Amman, S Badelt, ...
RNA biology 8 (6), 938, 2011
127*2011
Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
M Hackl, T Jakobi, J Blom, D Doppmeier, K Brinkrolf, R Szczepanowski, ...
Journal of biotechnology, 2011
1172011
ViennaRNA Package 2.0
PF Stadler, IL Hofacker, R Lorenz, SH Bernhart, H Tafer, C Siederdissen
Algorithms, 2011
862011
Predicting RNA 3D structure using a coarse-grain helix-centered model
P Kerpedjiev, C Höner zu Siederdissen, IL Hofacker
RNA 21 (6), 1110-1121, 2015
702015
A folding algorithm for extended RNA secondary structures
C Höner zu Siederdissen, SH Bernhart, PF Stadler, IL Hofacker
Bioinformatics 27 (13), i129-i136, 2011
682011
2D meets 4G: G-quadruplexes in RNA secondary structure prediction
R Lorenz, S Bernhart, J Qin, C Höner zu Siederdissen, A Tanzer, ...
Transactions on Computational Biology and Bioinformatics, 1-1, 2013
412013
Computational Design of RNAs with Complex Energy Landscapes
C Höner zu Siederdissen, S Hammer, I Abfalter, IL Hofacker, C Flamm, ...
Biopolymers 99 (12), 1124-1136, 2013
402013
microRNA-122 target sites in the hepatitis C virus RNA NS5B coding region and 3′ untranslated region: function in replication and influence of RNA secondary structure
GK Gerresheim, N Dünnes, A Nieder-Röhrmann, LA Shalamova, M Fricke, ...
Cellular and molecular life sciences 74 (4), 747-760, 2017
342017
Systematic analysis and evolution of 5S ribosomal DNA in metazoans.
J Vierna, S Wehner, C Höner zu Siederdissen, A Martınez-Lage, M Marz
Heredity 1, 12, 2013
332013
Deep sequencing of small RNAs confirms an annelid affinity of Myzostomida
C Helm, SH Bernhart, C Höner zu Siederdissen, B Nickel, C Bleidorn
Molecular Phylogenetics and Evolution, 2012
312012
Sneaking Around concatMap: Efficient Combinators for Dynamic Programming
C Höner zu Siederdissen
17th ACM SIGPLAN international conference on Functional programming, 215-226, 2012
312012
Discriminatory power of RNA family models
C Höner zu Siederdissen, IL Hofacker
Bioinformatics 26 (18), i453-i459, 2010
262010
RNAlien - Unsupervised RNA family model construction
F Eggenhofer, IL Hofacker, C Höner zu Siederdissen
252016
The HERMIT in the stream: fusing stream fusion's concatMap
A Farmer, C Höner zu Siederdissen, A Gill
Proceedings of the ACM SIGPLAN 2014 workshop on Partial evaluation and …, 2014
252014
Towards a comprehensive picture of alloacceptor tRNA remolding in metazoan mitochondrial genomes
AH Sahyoun, M Hölzer, F Jühling, C Höner zu Siederdissen, M Al-Arab, ...
Nucleic acids research 43 (16), 8044-8056, 2015
222015
Semantics and ambiguity of stochastic RNA family models
R Giegerich, C Höner Zu Siederdissen
Computational Biology and Bioinformatics, IEEE/ACM Transactions on 8 (2 …, 2011
212011
Product Grammars for Alignment and Folding
C Höner zu Siederdissen, IL Hofacker, PF Stadler
Transactions on Computational Biology and Bioinformatics, 2014
19*2014
Algebraic dynamic programming over general data structures
C Höner zu Siederdissen, SJ Prohaska, PF Stadler
BMC bioinformatics 16 (19), S2, 2015
18*2015
Automated identification of RNA 3D modules with discriminative power in RNA structural alignments
C Theis, C Höner zu Siederdissen, IL Hofacker, J Gorodkin
Nucleic acids research, gkt795, 2013
182013
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Articles 1–20