| Deciphering microbial interactions and detecting keystone species with co-occurrence networks D Berry, S Widder Frontiers in Microbiology 5, 219, 2014 | 589 | 2014 |
| Microbial ecology of drinking water distribution systems D Berry, C Xi, L Raskin Current opinion in biotechnology 17 (3), 297-302, 2006 | 475 | 2006 |
| Barcoded primers used in multiplex amplicon pyrosequencing bias amplification D Berry, KB Mahfoudh, M Wagner, A Loy Applied and environmental microbiology 77 (21), 7846-7849, 2011 | 467 | 2011 |
| High-fat diet alters gut microbiota physiology in mice H Daniel, AM Gholami, D Berry, C Desmarchelier, H Hahne, G Loh, ... The ISME journal 8 (2), 295-308, 2014 | 450 | 2014 |
| Temporal bacterial community dynamics vary among ulcerative colitis patients after fecal microbiota transplantation S Angelberger, W Reinisch, A Makristathis, C Lichtenberger, C Dejaco, ... American Journal of Gastroenterology 108 (10), 1620-1630, 2013 | 355 | 2013 |
| Tracking heavy water (D2O) incorporation for identifying and sorting active microbial cells D Berry, E Mader, TK Lee, D Woebken, Y Wang, D Zhu, M Palatinszky, ... Proceedings of the National Academy of Sciences 112 (2), E194-E203, 2015 | 241 | 2015 |
| Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis D Berry, C Schwab, G Milinovich, J Reichert, KB Mahfoudh, T Decker, ... The ISME journal 6 (11), 2091-2106, 2012 | 225 | 2012 |
| Hydrocarbon-degrading bacteria enriched by the Deepwater Horizon oil spill identified by cultivation and DNA-SIP T Gutierrez, DR Singleton, D Berry, T Yang, MD Aitken, A Teske The ISME journal 7 (11), 2091-2104, 2013 | 217 | 2013 |
| Pediatric obesity is associated with an altered gut microbiota and discordant shifts in Firmicutes populations A Riva, F Borgo, C Lassandro, E Verduci, G Morace, E Borghi, D Berry Environmental microbiology 19 (1), 95-105, 2017 | 205 | 2017 |
| NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite‐oxidizing Nitrospira M Pester, F Maixner, D Berry, T Rattei, H Koch, S Lücker, B Nowka, ... Environmental microbiology 16 (10), 3055-3071, 2014 | 203 | 2014 |
| Cyanate as an energy source for nitrifiers M Palatinszky, C Herbold, N Jehmlich, M Pogoda, P Han, M von Bergen, ... Nature 524 (7563), 105-108, 2015 | 177 | 2015 |
| Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium S Brugiroux, M Beutler, C Pfann, D Garzetti, HJ Ruscheweyh, D Ring, ... Nature microbiology 2 (2), 1-12, 2016 | 173 | 2016 |
| Host-compound foraging by intestinal microbiota revealed by single-cell stable isotope probing D Berry, B Stecher, A Schintlmeister, J Reichert, S Brugiroux, B Wild, ... Proceedings of the National Academy of Sciences 110 (12), 4720-4725, 2013 | 161 | 2013 |
| Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery C Schwab, D Berry, I Rauch, I Rennisch, J Ramesmayer, E Hainzl, ... The ISME journal 8 (5), 1101-1114, 2014 | 147 | 2014 |
| Microbial nutrient niches in the gut FC Pereira, D Berry Environmental microbiology 19 (4), 1366-1378, 2017 | 142 | 2017 |
| Intestinal microbiota: a source of novel biomarkers in inflammatory bowel diseases? D Berry, W Reinisch Best practice & research Clinical gastroenterology 27 (1), 47-58, 2013 | 132 | 2013 |
| Role of bacterial exopolysaccharides (EPS) in the fate of the oil released during the Deepwater Horizon oil spill T Gutierrez, D Berry, T Yang, S Mishamandani, L McKay, A Teske, ... PloS one 8 (6), e67717, 2013 | 129 | 2013 |
| Endospores of thermophilic bacteria as tracers of microbial dispersal by ocean currents AL Müller, JR De Rezende, CRJ Hubert, KU Kjeldsen, I Lagkouvardos, ... The ISME journal 8 (6), 1153-1165, 2014 | 104 | 2014 |
| A flexible and economical barcoding approach for highly multiplexed amplicon sequencing of diverse target genes CW Herbold, C Pelikan, O Kuzyk, B Hausmann, R Angel, D Berry, A Loy Frontiers in microbiology 6, 731, 2015 | 99 | 2015 |
| Colonization resistance and microbial ecophysiology: using gnotobiotic mouse models and single-cell technology to explore the intestinal jungle B Stecher, D Berry, A Loy FEMS microbiology reviews 37 (5), 793-829, 2013 | 90 | 2013 |
Alexander LoyProfessor for Microbial Communities, Dept. Microbiology and Ecosystem Science, University of ViennaVerified email at univie.ac.at
