| Genome-wide cell-free DNA fragmentation in patients with cancer S Cristiano, A Leal, J Phallen, J Fiksel, V Adleff, DC Bruhm, SØ Jensen, ... Nature 570 (7761), 385-389, 2019 | 870 | 2019 |
| Evolution of neoantigen landscape during immune checkpoint blockade in non–small cell lung cancer V Anagnostou, KN Smith, PM Forde, N Niknafs, R Bhattacharya, J White, ... Cancer discovery 7 (3), 264-276, 2017 | 822 | 2017 |
| Exome sequencing identifies frequent inactivating mutations in BAP1, ARID1A and PBRM1 in intrahepatic cholangiocarcinomas Y Jiao, TM Pawlik, RA Anders, FM Selaru, MM Streppel, DJ Lucas, ... Nature genetics 45 (12), 1470-1473, 2013 | 688 | 2013 |
| High grade serous ovarian carcinomas originate in the fallopian tube SI Labidi-Galy, E Papp, D Hallberg, N Niknafs, V Adleff, M Noe, ... Nature communications 8 (1), 1093, 2017 | 671 | 2017 |
| The genomic landscape of response to EGFR blockade in colorectal cancer A Bertotti, E Papp, S Jones, V Adleff, V Anagnostou, B Lupo, M Sausen, ... Nature 526 (7572), 263-267, 2015 | 455 | 2015 |
| A combination of molecular markers and clinical features improve the classification of pancreatic cysts S Springer, Y Wang, M Dal Molin, DL Masica, Y Jiao, I Kinde, A Blackford, ... Gastroenterology 149 (6), 1501-1510, 2015 | 439 | 2015 |
| Epigenetic therapy ties MYC depletion to reversing immune evasion and treating lung cancer MJ Topper, M Vaz, KB Chiappinelli, CEDS Shields, N Niknafs, RWC Yen, ... Cell 171 (6), 1284-1300. e21, 2017 | 408 | 2017 |
| Pathologic features of response to neoadjuvant anti-PD-1 in resected non-small-cell lung carcinoma: a proposal for quantitative immune-related pathologic response criteria (irPRC) TR Cottrell, ED Thompson, PM Forde, JE Stein, AS Duffield, ... Annals of Oncology 29 (8), 1853-1860, 2018 | 375 | 2018 |
| Whole genome sequencing defines the genetic heterogeneity of familial pancreatic cancer NJ Roberts, AL Norris, GM Petersen, ML Bondy, R Brand, S Gallinger, ... Cancer discovery 6 (2), 166-175, 2016 | 341 | 2016 |
| Mutational signature of aristolochic acid exposure as revealed by whole-exome sequencing ML Hoang, CH Chen, VS Sidorenko, J He, KG Dickman, BH Yun, ... Science translational medicine 5 (197), 197ra102-197ra102, 2013 | 285 | 2013 |
| Dynamics of tumor and immune responses during immune checkpoint blockade in non–small cell lung cancer V Anagnostou, PM Forde, JR White, N Niknafs, C Hruban, J Naidoo, ... Cancer research 79 (6), 1214-1225, 2019 | 257 | 2019 |
| Detection and characterization of lung cancer using cell-free DNA fragmentomes D Mathios, JS Johansen, S Cristiano, JE Medina, J Phallen, KR Larsen, ... Nature communications 12 (1), 5060, 2021 | 209 | 2021 |
| Multimodal genomic features predict outcome of immune checkpoint blockade in non-small-cell lung cancer V Anagnostou, N Niknafs, K Marrone, DC Bruhm, JR White, J Naidoo, ... Nature cancer 1 (1), 99-111, 2020 | 164 | 2020 |
| Ipilimumab plus nivolumab and DNA-repair defects in AR-V7-expressing metastatic prostate cancer K Boudadi, DL Suzman, V Anagnostou, W Fu, B Luber, H Wang, ... Oncotarget 9 (47), 28561, 2018 | 144 | 2018 |
| CRAVAT: cancer-related analysis of variants toolkit C Douville, H Carter, R Kim, N Niknafs, M Diekhans, PD Stenson, ... Bioinformatics 29 (5), 647-648, 2013 | 144 | 2013 |
| Exome-scale discovery of hotspot mutation regions in human cancer using 3D protein structure C Tokheim, R Bhattacharya, N Niknafs, DM Gygax, R Kim, M Ryan, ... Cancer research 76 (13), 3719-3731, 2016 | 137 | 2016 |
| Genomic characterization of malignant progression in neoplastic pancreatic cysts M Noë, N Niknafs, CG Fischer, WM Hackeng, V Beleva Guthrie, ... Nature communications 11 (1), 4085, 2020 | 102 | 2020 |
| A machine learning approach for somatic mutation discovery DE Wood, JR White, A Georgiadis, B Van Emburgh, S Parpart-Li, ... Science translational medicine 10 (457), eaar7939, 2018 | 102 | 2018 |
| Intraductal papillary mucinous neoplasms arise from multiple independent clones, each with distinct mutations CG Fischer, VB Guthrie, AM Braxton, L Zheng, P Wang, Q Song, JF Griffin, ... Gastroenterology 157 (4), 1123-1137. e22, 2019 | 90 | 2019 |
| Whole-genome sequencing of salivary gland adenoid cystic carcinoma EM Rettig, CC Talbot Jr, M Sausen, S Jones, JA Bishop, LD Wood, ... Cancer Prevention Research 9 (4), 265-274, 2016 | 89 | 2016 |
