Noushin Niknafs
Noushin Niknafs
Postdoctoral Research Fellow, Johns Hopkins University
Verified email at jhu.edu
Title
Cited by
Cited by
Year
Exome sequencing identifies frequent inactivating mutations in BAP1, ARID1A and PBRM1 in intrahepatic cholangiocarcinomas
Y Jiao, TM Pawlik, RA Anders, FM Selaru, MM Streppel, DJ Lucas, ...
Nature genetics 45 (12), 1470-1473, 2013
4892013
Evolution of neoantigen landscape during immune checkpoint blockade in non–small cell lung cancer
V Anagnostou, KN Smith, PM Forde, N Niknafs, R Bhattacharya, J White, ...
Cancer discovery 7 (3), 264-276, 2017
4322017
The genomic landscape of response to EGFR blockade in colorectal cancer
A Bertotti, E Papp, S Jones, V Adleff, V Anagnostou, B Lupo, M Sausen, ...
Nature 526 (7572), 263-267, 2015
3172015
High grade serous ovarian carcinomas originate in the fallopian tube
SI Labidi-Galy, E Papp, D Hallberg, N Niknafs, V Adleff, M Noe, ...
Nature communications 8 (1), 1-11, 2017
3062017
A combination of molecular markers and clinical features improve the classification of pancreatic cysts
S Springer, Y Wang, M Dal Molin, DL Masica, Y Jiao, I Kinde, A Blackford, ...
Gastroenterology 149 (6), 1501-1510, 2015
3032015
Mutational signature of aristolochic acid exposure as revealed by whole-exome sequencing
ML Hoang, CH Chen, VS Sidorenko, J He, KG Dickman, BH Yun, ...
Science translational medicine 5 (197), 197ra102-197ra102, 2013
2112013
Genome-wide cell-free DNA fragmentation in patients with cancer
S Cristiano, A Leal, J Phallen, J Fiksel, V Adleff, DC Bruhm, SŲ Jensen, ...
Nature 570 (7761), 385-389, 2019
1992019
Whole genome sequencing defines the genetic heterogeneity of familial pancreatic cancer
NJ Roberts, AL Norris, GM Petersen, ML Bondy, R Brand, S Gallinger, ...
Cancer discovery 6 (2), 166-175, 2016
1992016
Epigenetic therapy ties MYC depletion to reversing immune evasion and treating lung cancer
MJ Topper, M Vaz, KB Chiappinelli, CEDS Shields, N Niknafs, RWC Yen, ...
Cell 171 (6), 1284-1300. e21, 2017
1742017
CRAVAT: cancer-related analysis of variants toolkit
C Douville, H Carter, R Kim, N Niknafs, M Diekhans, PD Stenson, ...
Bioinformatics 29 (5), 647-648, 2013
1132013
Pathologic features of response to neoadjuvant anti-PD-1 in resected non-small-cell lung carcinoma: a proposal for quantitative immune-related pathologic response criteria (irPRC)
TR Cottrell, ED Thompson, PM Forde, JE Stein, AS Duffield, ...
Annals of Oncology 29 (8), 1853-1860, 2018
1082018
Ipilimumab plus nivolumab and DNA-repair defects in AR-V7-expressing metastatic prostate cancer
K Boudadi, DL Suzman, V Anagnostou, W Fu, B Luber, H Wang, ...
Oncotarget 9 (47), 28561, 2018
852018
Exome-scale discovery of hotspot mutation regions in human cancer using 3D protein structure
C Tokheim, R Bhattacharya, N Niknafs, DM Gygax, R Kim, M Ryan, ...
Cancer research 76 (13), 3719-3731, 2016
802016
Dynamics of tumor and immune responses during immune checkpoint blockade in non–small cell lung cancer
V Anagnostou, PM Forde, JR White, N Niknafs, C Hruban, J Naidoo, ...
Cancer research 79 (6), 1214-1225, 2019
772019
MuPIT interactive: webserver for mapping variant positions to annotated, interactive 3D structures
N Niknafs, D Kim, RG Kim, M Diekhans, M Ryan, PD Stenson, DN Cooper, ...
Human genetics 132 (11), 1235-1243, 2013
662013
Whole-genome sequencing of salivary gland adenoid cystic carcinoma
EM Rettig, CC Talbot, M Sausen, S Jones, JA Bishop, LD Wood, ...
Cancer Prevention Research 9 (4), 265-274, 2016
592016
SubClonal hierarchy inference from somatic mutations: automatic reconstruction of cancer evolutionary trees from multi-region next generation sequencing
N Niknafs, V Beleva-Guthrie, DQ Naiman, R Karchin
PLoS Comput Biol 11 (10), e1004416, 2015
562015
Multimodal genomic features predict outcome of immune checkpoint blockade in non-small-cell lung cancer
V Anagnostou, N Niknafs, K Marrone, DC Bruhm, JR White, J Naidoo, ...
Nature cancer 1 (1), 99-111, 2020
372020
A machine learning approach for somatic mutation discovery
DE Wood, JR White, A Georgiadis, B Van Emburgh, S Parpart-Li, ...
Science translational medicine 10 (457), 2018
372018
Evolution of neoantigen landscape during immune checkpoint blockade in non-small cell lung cancer. Cancer Discov. 2017; 7: 264–276. doi: 10.1158/2159-8290
V Anagnostou, KN Smith, PM Forde, N Niknafs, R Bhattacharya, J White, ...
CD-16-0828.[Europe PMC free article][Abstract][CrossRef][Google Scholar], 0
35
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