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Thomas Brettin
Thomas Brettin
Argonne National Laboratory and University of Chicago
Verified email at anl.gov
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Cited by
Cited by
Year
RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
T Brettin, JJ Davis, T Disz, RA Edwards, S Gerdes, GJ Olsen, R Olson, ...
Scientific reports 5 (1), 1-6, 2015
23542015
Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center
AR Wattam, JJ Davis, R Assaf, S Boisvert, T Brettin, C Bun, N Conrad, ...
Nucleic acids research 45 (D1), D535-D542, 2017
14982017
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)
D Martinez, RM Berka, B Henrissat, M Saloheimo, M Arvas, SE Baker, ...
Nature biotechnology 26 (5), 553-560, 2008
13532008
KBase: the United States department of energy systems biology knowledgebase
AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ...
Nature biotechnology 36 (7), 566-569, 2018
10542018
Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils
NL Ward, JF Challacombe, PH Janssen, B Henrissat, PM Coutinho, M Wu, ...
Applied and environmental microbiology 75 (7), 2046-2056, 2009
10132009
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities
JJ Davis, AR Wattam, RK Aziz, T Brettin, R Butler, RM Butler, P Chlenski, ...
Nucleic acids research 48 (D1), D606-D612, 2020
8452020
Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion
D Martinez, J Challacombe, I Morgenstern, D Hibbett, M Schmoll, ...
Proceedings of the National Academy of Sciences 106 (6), 1954-1959, 2009
6792009
Genomewide search in Canadian families with inflammatory bowel disease reveals two novel susceptibility loci
JD Rioux, MS Silverberg, MJ Daly, AH Steinhart, RS McLeod, AM Griffiths, ...
The American Journal of Human Genetics 66 (6), 1863-1870, 2000
6232000
Classification, nomenclature, and database development for hepatitis C virus (HCV) and related viruses: proposals for standardization
B Robertson, G Myers, C Howard, T Brettin, J Bukh, B Gaschen, ...
Archives of virology 143, 2493-2503, 1998
6231998
Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens
MW Silby, AM Cerdeño-Tárraga, GS Vernikos, SR Giddens, RW Jackson, ...
Genome biology 10, 1-16, 2009
4792009
Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae
J Chun, CJ Grim, NA Hasan, JH Lee, SY Choi, BJ Haley, E Taviani, ...
Proceedings of the National Academy of Sciences 106 (36), 15442-15447, 2009
4282009
Mapping of a gene for type 2 diabetes associated with an insulin secretion defect by a genome scan in Finnish families
MM Mahtani, E Widén, M Lehto, J Thomas, M McCarthy, J Brayer, ...
Nature genetics 14 (1), 90-94, 1996
4191996
The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum)
E Pierce, G Xie, RD Barabote, E Saunders, CS Han, JC Detter, ...
Environmental microbiology 10 (10), 2550-2573, 2008
3172008
Introducing the bacterial and viral bioinformatics resource center (BV-BRC): a resource combining PATRIC, IRD and ViPR
RD Olson, R Assaf, T Brettin, N Conrad, C Cucinell, JJ Davis, ...
Nucleic acids research 51 (D1), D678-D689, 2023
2992023
Pathogenomic Sequence Analysis of Bacillus cereus and Bacillus thuringiensis Isolates Closely Related to Bacillus anthracis
CS Han, G Xie, JF Challacombe, MR Altherr, SS Bhotika, D Bruce, ...
Journal of bacteriology 188 (9), 3382-3390, 2006
2942006
Characterization of the MODY3 phenotype. Early-onset diabetes caused by an insulin secretion defect.
M Lehto, T Tuomi, MM Mahtani, E Widén, C Forsblom, L Sarelin, ...
The Journal of clinical investigation 99 (4), 582-591, 1997
2911997
Deinococcus geothermalis: The Pool of Extreme Radiation Resistance Genes Shrinks
KS Makarova, MV Omelchenko, EK Gaidamakova, VY Matrosova, ...
PLoS One 2 (9), e955, 2007
2892007
Temperature regulation of virulence factors in the pathogen Vibrio coralliilyticus
NE Kimes, CJ Grim, WR Johnson, NA Hasan, BD Tall, MH Kothary, H Kiss, ...
The ISME journal 6 (4), 835-846, 2012
2792012
Genome Sequence of the Cellulolytic Gliding Bacterium Cytophaga hutchinsonii
G Xie, DC Bruce, JF Challacombe, O Chertkov, JC Detter, P Gilna, ...
Applied and environmental microbiology 73 (11), 3536-3546, 2007
2702007
The Methanosarcina barkeri Genome: Comparative Analysis with Methanosarcina acetivorans and Methanosarcina mazei Reveals Extensive Rearrangement …
DL Maeder, I Anderson, TS Brettin, DC Bruce, P Gilna, CS Han, A Lapidus, ...
Journal of bacteriology 188 (22), 7922-7931, 2006
2312006
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