| Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ... nature 447 (7146), 799-816, 2007 | 6044 | 2007 |
| RNA maps reveal new RNA classes and a possible function for pervasive transcription P Kapranov, J Cheng, S Dike, DA Nix, R Duttagupta, AT Willingham, ... Science 316 (5830), 1484-1488, 2007 | 2986 | 2007 |
| The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons I Braasch, AR Gehrke, JJ Smith, K Kawasaki, T Manousaki, J Pasquier, ... Nature genetics 48 (4), 427-437, 2016 | 590 | 2016 |
| The expansion of the metazoan microRNA repertoire J Hertel, M Lindemeyer, K Missal, C Fried, A Tanzer, C Flamm, ... BMC genomics 7, 1-15, 2006 | 385 | 2006 |
| An updated human snoRNAome H Jorjani, S Kehr, DJ Jedlinski, R Gumienny, J Hertel, PF Stadler, ... Nucleic acids research 44 (11), 5068-5082, 2016 | 266 | 2016 |
| Hairpins in a Haystack: recognizing microRNA precursors in comparative genomics data J Hertel, PF Stadler Bioinformatics 22 (14), e197-e202, 2006 | 249 | 2006 |
| Structured RNAs in the ENCODE selected regions of the human genome S Washietl, JS Pedersen, JO Korbel, C Stocsits, AR Gruber, ... Genome research 17 (6), 852-864, 2007 | 226 | 2007 |
| Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis C Jöchl, M Rederstorff, J Hertel, PF Stadler, IL Hofacker, M Schrettl, ... Nucleic acids research 36 (8), 2677-2689, 2008 | 219 | 2008 |
| Genomic and morphological evidence converge to resolve the enigma of Strepsiptera O Niehuis, G Hartig, S Grath, H Pohl, J Lehmann, H Tafer, A Donath, ... Current Biology 22 (14), 1309-1313, 2012 | 182 | 2012 |
| SnoReport: computational identification of snoRNAs with unknown targets J Hertel, IL Hofacker, PF Stadler Bioinformatics 24 (2), 158-164, 2008 | 165 | 2008 |
| Evidence for human microRNA-offset RNAs in small RNA sequencing data D Langenberger, C Bermudez-Santana, J Hertel, S Hoffmann, ... Bioinformatics 25 (18), 2298-2301, 2009 | 160 | 2009 |
| Evolution of the let-7 microRNA family J Hertel, S Bartschat, A Wintsche, C Otto, ... RNA biology 9 (3), 231-241, 2012 | 136 | 2012 |
| Accurate and efficient reconstruction of deep phylogenies from structured RNAs RR Stocsits, H Letsch, J Hertel, B Misof, PF Stadler Nucleic Acids Research 37 (18), 6184-6193, 2009 | 128 | 2009 |
| Variations on RNA folding and alignment: lessons from Benasque AF Bompfünewerer, R Backofen, SH Bernhart, J Hertel, IL Hofacker, ... Journal of mathematical biology 56, 129-144, 2008 | 117 | 2008 |
| The coilin interactome identifies hundreds of small noncoding RNAs that traffic through Cajal bodies M Machyna, S Kehr, K Straube, D Kappei, F Buchholz, F Butter, J Ule, ... Molecular cell 56 (3), 389-399, 2014 | 110 | 2014 |
| Third Report on Chicken Genes and Chromosomes 2015Prepared by M Schmid, J Smith, DW Burt, BL Aken, PB Antin, AL Archibald, C Ashwell, ... Cytogenetic and genome research 145 (2), 78-179, 2015 | 96 | 2015 |
| RNAs everywhere: Genome‐wide annotation of structured RNAs R Backofen, SH Bernhart, C Flamm, C Fried, G Fritzsch, J Hackermüller, ... Journal of Experimental Zoology Part B: Molecular and Developmental …, 2007 | 93 | 2007 |
| Non-coding RNA annotation of the genome of Trichoplax adhaerens J Hertel, D de Jong, M Marz, D Rose, H Tafer, A Tanzer, B Schierwater, ... Nucleic acids research 37 (5), 1602-1615, 2009 | 76 | 2009 |
| Homology-based annotation of non-coding RNAs in the genomes of Schistosoma mansoni and Schistosoma japonicum CS Copeland, M Marz, D Rose, J Hertel, PJ Brindley, CB Santana, S Kehr, ... BMC genomics 10, 1-13, 2009 | 71 | 2009 |
| The expansion of animal microRNA families revisited J Hertel, PF Stadler Life 5 (1), 905-920, 2015 | 68 | 2015 |
