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Rui Branca
Rui Branca
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Zitiert von
Zitiert von
Jahr
HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics
RMM Branca, LM Orre, HJ Johansson, V Granholm, M Huss, ...
Nature methods 11 (1), 59-62, 2014
2392014
Synaptic markers of cognitive decline in neurodegenerative diseases: a proteomic approach
E Bereczki, RM Branca, PT Francis, JB Pereira, JH Baek, T Hortobágyi, ...
Brain 141 (2), 582-595, 2018
1402018
Mammalian target of rapamycin (mTor) mediates tau protein dyshomeostasis: implication for Alzheimer disease
Z Tang, E Bereczki, H Zhang, S Wang, C Li, X Ji, RM Branca, J Lehtiö, ...
Journal of Biological Chemistry 288 (22), 15556-15570, 2013
1172013
Breast cancer quantitative proteome and proteogenomic landscape
HJ Johansson, F Socciarelli, NM Vacanti, MH Haugen, Y Zhu, I Siavelis, ...
Nature communications 10 (1), 1-14, 2019
1012019
Tumor proteomics by multivariate analysis on individual pathway data for characterization of vulvar cancer phenotypes
AS Sandberg, G Lindell, BN Källström, RM Branca, KG Danielsson, ...
Molecular & Cellular Proteomics 11 (7), M112. 016998-1-M112. 016998-14, 2012
942012
Discovery of coding regions in the human genome by integrated proteogenomics analysis workflow
Y Zhu, LM Orre, HJ Johansson, M Huss, J Boekel, M Vesterlund, ...
Nature communications 9 (1), 1-14, 2018
932018
Quantitative accuracy in mass spectrometry based proteomics of complex samples: the impact of labeling and precursor interference
AS Sandberg, RMM Branca, J Lehtiö, J Forshed
Journal of proteomics 96, 133-144, 2014
872014
Proteomic screen reveals Fbw7 as a modulator of the NF-κB pathway
A Arabi, K Ullah, RMM Branca, J Johansson, D Bandarra, M Haneklaus, ...
Nature communications 3 (1), 1-11, 2012
832012
Defining, comparing, and improving iTRAQ quantification in mass spectrometry proteomics data
L Hultin-Rosenberg, J Forshed, RMM Branca, J Lehtiö, HJ Johansson
Molecular & Cellular Proteomics 12 (7), 2021-2031, 2013
662013
Quantitative proteomics profiling of primary lung adenocarcinoma tumors reveals functional perturbations in tumor metabolism
M Pernemalm, L De Petris, RM Branca, J Forshed, L Kanter, JC Soria, ...
Journal of proteome research 12 (9), 3934-3943, 2013
562013
Organellar oligopeptidase (OOP) provides a complementary pathway for targeting peptide degradation in mitochondria and chloroplasts
B Kmiec, PF Teixeira, RPA Berntsson, MW Murcha, RMM Branca, ...
Proceedings of the National Academy of Sciences 110 (40), E3761-E3769, 2013
552013
A combined proteomic and transcriptomic approach shows diverging molecular mechanisms in thoracic aortic aneurysm development in patients with tricuspid-and bicuspid aortic valve
S Kjellqvist, S Maleki, T Olsson, M Chwastyniak, RMM Branca, J Lehtiö, ...
Molecular & Cellular Proteomics 12 (2), 407-425, 2013
532013
Direct observation of structurally encoded metal discrimination and ether bond formation in a heterodinuclear metalloprotein
JJ Griese, K Roos, N Cox, HS Shafaat, RMM Branca, J Lehtiö, A Gräslund, ...
Proceedings of the National Academy of Sciences 110 (43), 17189-17194, 2013
442013
Proteomic study of thyroid tumors reveals frequent up-regulation of the Ca2+-binding protein S100A6 in papillary thyroid carcinoma
A Sofiadis, A Dinets, LM Orre, RM Branca, CC Juhlin, T Foukakis, ...
Thyroid 20 (10), 1067-1076, 2010
442010
Phosphoproteomic profiling of NSCLC cells reveals that ephrin B3 regulates pro-survival signaling through Akt1-mediated phosphorylation of the EphA2 receptor
S Stahl, R Mm Branca, G Efazat, M Ruzzene, B Zhivotovsky, ...
Journal of proteome research 10 (5), 2566-2578, 2011
362011
Metal-free ribonucleotide reduction powered by a DOPA radical in Mycoplasma pathogens
V Srinivas, H Lebrette, D Lundin, Y Kutin, M Sahlin, M Lerche, J Eirich, ...
Nature 563 (7731), 416-420, 2018
342018
Mesenchymal state of intimal cells may explain higher propensity to ascending aortic aneurysm in bicuspid aortic valves
S Maleki, S Kjellqvist, V Paloschi, J Magné, RMM Branca, L Du, ...
Scientific reports 6 (1), 1-16, 2016
342016
Structural basis for oxygen activation at a heterodinuclear manganese/iron cofactor
JJ Griese, R Kositzki, P Schrapers, RMM Branca, A Nordström, J Lehtiö, ...
Journal of Biological Chemistry 290 (42), 25254-25272, 2015
342015
Enhanced information output from shotgun proteomics data by protein quantification and peptide quality control (PQPQ)
J Forshed, HJ Johansson, M Pernemalm, RMM Branca, AS Sandberg, ...
Molecular & Cellular Proteomics 10 (10), 2011
342011
Tartrate-resistant acid phosphatase (TRAP/ACP5) promotes metastasis-related properties via TGFβ2/TβR and CD44 in MDA-MB-231 breast cancer cells
A Reithmeier, E Panizza, M Krumpel, LM Orre, RMM Branca, J Lehtiö, ...
BMC cancer 17 (1), 1-19, 2017
332017
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