Nadia Pisanti

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Citations	2005	1058
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Roberto GrossiProfessor of Computer Science, University of Pisa, ItalyVerified email at di.unipi.it
Marie-France SagotDirector of Research, InriaVerified email at inria.fr
Pierre PeterlongoInriaVerified email at inria.fr
Gunnar W. KlauHeinrich Heine University DüsseldorfVerified email at hhu.de
Murray PattersonAssistant Professor, Georgia State UniversityVerified email at cs.gsu.edu
Giulia BernardiniPostdoc, CWI, AmsterdamVerified email at unimib.it
Leen StougieSenior Researcher CWI, Prof. of Operations Research Vrije Universiteit, AmsterdamVerified email at cwi.nl
Tobias MarschallHeinrich Heine University DüsseldorfVerified email at hhu.de
Maxime CrochemoreKCLVerified email at kcl.ac.uk
Alexander SchönhuthSenior Researcher, Centrum Wiskunde & Informatica, AmsterdamVerified email at cwi.nl
Gustavo SacomotoPost-Doc Researcher INRIA (Lyon, France)Verified email at inria.fr
Roberto MarangoniDepartment of Biology, University of Pisa, Italy and Institute of Biophysics of the CNR, ItalyVerified email at unipi.it
Leo van IerselAssociate professor, TU DelftVerified email at tudelft.nl
Giulia MenconiVisiting scholar, Computer Science Department, Pisa University (Italy)Verified email at mail.dm.unipi.it
Simone ZaccariaPrincipal Research Fellow, University College London, Cancer InstituteVerified email at ucl.ac.uk
Riccardo DondiUniversità degli studi di BergamoVerified email at unibg.it
Yuri PirolaAssistant professor at DISCo, Univ. of Milano-BicoccaVerified email at unimib.it
Rui FerreiraStaff Machine Learning Engineer, SpotifyVerified email at spotify.com
Nicola PrezzaCa' Foscari UniversityVerified email at unive.it
Fatima VayaniKing's College LondonVerified email at kcl.ac.uk

Nadia Pisanti

University of Pisa & Erable Team INRIA

Verified email at di.unipi.it - Homepage

Computational Biology Bioinformatics Algorithms


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Applied combinatorics on words M Lothaire Cambridge Univ Pr, 2005	532	2005
Computational pan-genomics: status, promises and challenges Briefings in Bioinformatics, 2016	178*	2016
WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads M Patterson, T Marschall, N Pisanti, L Van Iersel, L Stougie, GW Klau, ... Journal of Computational Biology 22 (6), 498-509, 2015	142	2015
RISOTTO: Fast Extraction of Motifs with Mismatches N Pisanti, AM Carvalho, L Marsan, MF Sagot Latin American Symposium on Theoretical Informatics, 757-768, 2006	123	2006
Bases of motifs for generating repeated patterns with wild cards N Pisanti, M Crochemore, R Grossi, MF Sagot IEEE/ACM Transactions on Computational Biology and Bioinformatics 2 (1), 40-50, 2005	77	2005
Optimal listing of cycles and st-paths in undirected graphs E Birmelé, R Ferreira, R Grossi, A Marino, N Pisanti, R Rizzi, G Sacomoto Proceedings of the twenty-fourth annual ACM-SIAM symposium on Discrete …, 2013	74	2013
WhatsHap: fast and accurate read-based phasing M Martin, M Patterson, S Garg, S Fischer, N Pisanti, GW Klau, ... BioRxiv, 085050, 2016	57	2016
Identifying SNPs without a reference genome by comparing raw reads P Peterlongo, N Schnel, N Pisanti, MF Sagot, V Lacroix International symposium on string processing and information retrieval, 147-158, 2010	50	2010
A basis of tiling motifs for generating repeated patterns and its complexity for higher quorum N Pisanti, M Crochemore, R Grossi, MF Sagot International Symposium on Mathematical Foundations of Computer Science, 622-631, 2003	44	2003
HapCol: accurate and memory-efficient haplotype assembly from long reads Y Pirola, S Zaccaria, R Dondi, GW Klau, N Pisanti, P Bonizzoni Bioinformatics 32 (11), 1610-1617, 2016	42	2016
WhatsHap: Haplotype Assembly for Future-Generation Sequencing Reads M Patterson, T Marschall, N Pisanti, L van Iersel, L Stougie, GW Klau, ... International Conference on Research in Computational Molecular Biology, 237-249, 2014	38	2014
A first approach to finding common motifs with gaps CS Iliopoulos, J McHugh, P Peterlongo, N Pisanti, W Rytter, MF Sagot International Journal of Foundations of Computer Science 16 (06), 1145-1154, 2005	35	2005
Lossless filter for multiple repeats with bounded edit distance P Peterlongo, GAT Sacomoto, AP do Lago, N Pisanti, MF Sagot Algorithms for Molecular Biology 4 (1), 1-20, 2009	28	2009
On the minimum error correction problem for haplotype assembly in diploid and polyploid genomes P Bonizzoni, R Dondi, GW Klau, Y Pirola, N Pisanti, S Zaccaria Journal of Computational Biology 23 (9), 718-736, 2016	26	2016
Lossless filter for multiple repetitions with Hamming distance P Peterlongo, N Pisanti, F Boyer, AP Do Lago, MF Sagot Journal of Discrete Algorithms 6 (3), 497-509, 2008	26	2008
On-line pattern matching on similar texts R Grossi, CS Iliopoulos, L Chang, N Pisanti, SP Pissis, R Ahmad, ... 28th Annual Symposium on Combinatorial Pattern Matching (CPM) 78, 1, 2017	24	2017
DNA computing: a survey N Pisanti Bulletin of the EATCS 64, 188-216, 1998	23	1998
A survey on DNA computing N Pisanti Università di Pisa, 1997	23	1997
Circular sequence comparison: algorithms and applications R Grossi, CS Iliopoulos, R Mercas, N Pisanti, SP Pissis, A Retha, F Vayani Algorithms for Molecular Biology 11 (1), 1-14, 2016	20	2016
Suffix tree characterization of maximal motifs in biological sequences M Federico, N Pisanti Theoretical Computer Science 410 (43), 4391-4401, 2009	20	2009

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