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Sofie Van Gassen
Sofie Van Gassen
Verified email at ugent.be
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Year
Guidelines for the use of flow cytometry and cell sorting in immunological studies
A Cossarizza, HD Chang, A Radbruch, A Acs, D Adam, S Adam‐Klages, ...
European journal of immunology 49 (10), 1457-1973, 2019
12642019
FlowSOM: Using self‐organizing maps for visualization and interpretation of cytometry data
S Van Gassen, B Callebaut, MJ Van Helden, BN Lambrecht, P Demeester, ...
Cytometry Part A 87 (7), 636-645, 2015
10472015
Unsupervised high-dimensional analysis aligns dendritic cells across tissues and species
M Guilliams, CA Dutertre, CL Scott, N McGovern, D Sichien, S Chakarov, ...
Immunity 45 (3), 669-684, 2016
6692016
Computational flow cytometry: helping to make sense of high-dimensional immunology data
Y Saeys, S Van Gassen, BN Lambrecht
Nature Reviews Immunology 16 (7), 449-462, 2016
3952016
An immune clock of human pregnancy
N Aghaeepour, EA Ganio, D Mcilwain, AS Tsai, M Tingle, S Van Gassen, ...
Science immunology 2 (15), eaan2946, 2017
3372017
IRF8 transcription factor controls survival and function of terminally differentiated conventional and plasmacytoid dendritic cells, respectively
D Sichien, CL Scott, L Martens, M Vanderkerken, S Van Gassen, ...
Immunity 45 (3), 626-640, 2016
2552016
RORγt inhibition selectively targets IL-17 producing iNKT and γδ-T cells enriched in Spondyloarthritis patients
K Venken, P Jacques, C Mortier, ME Labadia, T Decruy, J Coudenys, ...
Nature communications 10 (1), 1-15, 2019
1212019
Myeloid cell heterogeneity in cancer: not a single cell alike
M Kiss, S Van Gassen, K Movahedi, Y Saeys, D Laoui
Cellular immunology 330, 188-201, 2018
1132018
Monocyte-driven atypical cytokine storm and aberrant neutrophil activation as key mediators of COVID-19 disease severity
L Vanderbeke, P Van Mol, Y Van Herck, F De Smet, S Humblet-Baron, ...
Nature communications 12 (1), 1-15, 2021
1102021
CytoNorm: a normalization algorithm for cytometry data
S Van Gassen, B Gaudilliere, MS Angst, Y Saeys, N Aghaeepour
Cytometry Part A 97 (3), 268-278, 2020
702020
A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes
N Aghaeepour, P Chattopadhyay, M Chikina, T Dhaene, S Van Gassen, ...
Cytometry Part A 89 (1), 16-21, 2016
612016
FloReMi: Flow density survival regression using minimal feature redundancy
S Van Gassen, C Vens, T Dhaene, BN Lambrecht, Y Saeys
Cytometry Part A 89 (1), 22-29, 2016
422016
A human immune dysregulation syndrome characterized by severe hyperinflammation with a homozygous nonsense Roquin-1 mutation
SJ Tavernier, V Athanasopoulos, P Verloo, G Behrens, J Staal, ...
Nature communications 10 (1), 1-16, 2019
332019
Analyzing high-dimensional cytometry data using FlowSOM
K Quintelier, A Couckuyt, A Emmaneel, J Aerts, Y Saeys, S Van Gassen
Nature protocols 16 (8), 3775-3801, 2021
302021
The ORMDL3 asthma susceptibility gene regulates systemic ceramide levels without altering key asthma features in mice
N Debeuf, A Zhakupova, R Steiner, S Van Gassen, K Deswarte, ...
Journal of Allergy and Clinical Immunology 144 (6), 1648-1659. e9, 2019
252019
An updated guide for the perplexed: cytometry in the high-dimensional era
T Liechti, LM Weber, TM Ashhurst, N Stanley, M Prlic, S Van Gassen, ...
Nature Immunology 22 (10), 1190-1197, 2021
192021
A computational pipeline for the diagnosis of CVID patients
A Emmaneel, DJ Bogaert, S Van Gassen, SJ Tavernier, M Dullaers, ...
Frontiers in immunology 10, 2009, 2019
142019
Computational flow cytometry as a diagnostic tool in suspected‐myelodysplastic syndromes
C Duetz, S Van Gassen, TM Westers, MF van Spronsen, C Bachas, ...
Cytometry Part A 99 (8), 814-824, 2021
122021
Stabilization of cytokine mRNAs in iNKT cells requires the serine-threonine kinase IRE1alpha
S Govindarajan, D Gaublomme, R Van der Cruyssen, E Verheugen, ...
Nature communications 9 (1), 1-12, 2018
102018
Response to Orlova et al.“Science not art: Statistically sound methods for identifying subsets in multi-dimensional flow and mass cytometry data sets”
Y Saeys, S Van Gassen, B Lambrecht
Nature Reviews Immunology 18 (1), 78-78, 2018
102018
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