Hiroyuki Ogata

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Minoru KanehisaProfessor, Institute for Chemical Research, Kyoto UniversityVerified email at kuicr.kyoto-u.ac.jp
Susumu GotoDatabase Center for Life Science, Research Organization of Information and SystemsVerified email at dbcls.rois.ac.jp
Didier RaoultIHU Méditerranée Infection, Aix Marseille Université, AP-HM CHU Timone, Marseille, FRANCEVerified email at univ-amu.fr
Stephane AudicSARL RoskodingVerified email at roskoding.fr
Pierre-Edouard FournierVITROME, IHU Mediterranee-Infection, Aix-Marseille University, Marseille, FranceVerified email at univ-amu.fr
Hidemasa BonoGraduate School of Integrated Sciences for Life, Hiroshima UniversityVerified email at hiroshima-u.ac.jp
Pascal HingampAssociate Professor, Aix Marseille University, FranceVerified email at univ-amu.fr
Guillaume BlancCNRS/Aix-Marseille University/Mediterranean Institute of OceanographyVerified email at mio.osupytheas.fr
Yosuke NishimuraCeBN, Japan Agency for Marine-Earth Science and TechnologyVerified email at jamstec.go.jp
Karsenti EricSenior scientist EMBLVerified email at embl.de
Adam MonierRoyal Society University Research Fellow, University of ExeterVerified email at exeter.ac.uk
Shinichi SunagawaETH Zurich; Swiss Institute of BioinformaticsVerified email at ethz.ch
Peer BorkDirector of EMBL HeidelbergVerified email at embl.de
Michael (Mike) AllenExeter UniversityVerified email at exeter.ac.uk
Yves DesdevisesupmcVerified email at obs-banyuls.fr
Camille ClerissiEPHE CRIOBE USR3278Verified email at ephe.sorbonne.fr
Gunnar BratbakProfessor in Microbiology, University of BergenVerified email at uib.no
Jeroen RaesProfessor, Faculty of Medicine, Rega Institute, KU Leuven; Group Leader Microbiome, VIB, BelgiumVerified email at med.kuleuven.be
Isabel FerreraDistinguished Investigator, Spanish Institute of OceanographyVerified email at ieo.es
Hugo SarmentoProfessor, Universidade Federal de São Carlos (Brazil) - Dept. HidrobiologiaVerified email at ufscar.br

Hiroyuki Ogata

Institute for Chemical Research, Kyoto University

Verified email at kuicr.kyoto-u.ac.jp - Homepage

Bioinformatics Evolution Ecology


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KEGG: Kyoto encyclopedia of genes and genomes H Ogata, S Goto, K Sato, W Fujibuchi, H Bono, M Kanehisa Nucleic acids research 27 (1), 29-34, 1999	4465	1999
Structure and function of the global ocean microbiome S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ... Science 348 (6237), 1261359, 2015	1747	2015
Eukaryotic plankton diversity in the sunlit ocean C De Vargas, S Audic, N Henry, J Decelle, F Mahé, R Logares, E Lara, ... Science 348 (6237), 1261605, 2015	1358	2015
The 1.2-megabase genome sequence of Mimivirus D Raoult, S Audic, C Robert, C Abergel, P Renesto, H Ogata, B La Scola, ... science 306 (5700), 1344-1350, 2004	1084	2004
Comparative Genomics of Multidrug Resistance in Acinetobacter baumannii PE Fournier, D Vallenet, V Barbe, S Audic, H Ogata, L Poirel, H Richet, ... PLoS genetics 2 (1), e7, 2006	962	2006
Determinants of community structure in the global plankton interactome G Lima-Mendez, K Faust, N Henry, J Decelle, S Colin, F Carcillo, ... Science 348 (6237), 1262073, 2015	673	2015
Patterns and ecological drivers of ocean viral communities JR Brum, JC Ignacio-Espinoza, S Roux, G Doulcier, SG Acinas, A Alberti, ... Science 348 (6237), 1261498, 2015	556	2015
Plankton networks driving carbon export in the oligotrophic ocean L Guidi, S Chaffron, L Bittner, D Eveillard, A Larhlimi, S Roux, Y Darzi, ... Nature 532 (7600), 465-470, 2016	523	2016
Mechanisms of evolution in Rickettsia conorii and R. prowazekii H Ogata, S Audic, P Renesto-Audiffren, PE Fournier, V Barbe, D Samson, ... Science 293 (5537), 2093-2098, 2001	508	2001
AAindex: amino acid index database S Kawashima, H Ogata, M Kanehisa Nucleic acids research 27 (1), 368-369, 1999	500	1999
Pan genome of the phytoplankton Emiliania underpins its global distribution BA Read, J Kegel, MJ Klute, A Kuo, SC Lefebvre, F Maumus, C Mayer, ... Nature 499 (7457), 209-213, 2013	444	2013
KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold T Aramaki, R Blanc-Mathieu, H Endo, K Ohkubo, M Kanehisa, S Goto, ... Bioinformatics 36 (7), 2251-2252, 2020	440	2020
A holistic approach to marine eco-systems biology E Karsenti, SG Acinas, P Bork, C Bowler, C De Vargas, J Raes, M Sullivan, ... PLoS biology 9 (10), e1001177, 2011	400	2011
Patterns of rare and abundant marine microbial eukaryotes R Logares, S Audic, D Bass, L Bittner, C Boutte, R Christen, JM Claverie, ... Current Biology 24 (8), 813-821, 2014	378	2014
Marine DNA viral macro-and microdiversity from pole to pole AC Gregory, AA Zayed, N Conceição-Neto, B Temperton, B Bolduc, ... Cell 177 (5), 1109-1123. e14, 2019	344	2019
Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens H Ogata, B La Scola, S Audic, P Renesto, G Blanc, C Robert, PE Fournier, ... PLoS genetics 2 (5), e76, 2006	322	2006
Metagenomic 16S rDNA I llumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities R Logares, S Sunagawa, G Salazar, FM Cornejo‐Castillo, I Ferrera, ... Environmental microbiology 16 (9), 2659-2671, 2014	318	2014
Marine protist diversity in E uropean coastal waters and sediments as revealed by high‐throughput sequencing R Massana, A Gobet, S Audic, D Bass, L Bittner, C Boutte, A Chambouvet, ... Environmental microbiology 17 (10), 4035-4049, 2015	314	2015
Open science resources for the discovery and analysis of Tara Oceans data S Pesant, F Not, M Picheral, S Kandels-Lewis, N Le Bescot, G Gorsky, ... Scientific data 2 (1), 1-16, 2015	299	2015
A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters H Ogata, W Fujibuchi, S Goto, M Kanehisa Nucleic acids research 28 (20), 4021-4028, 2000	294	2000

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